Chlorine in PDB 4x3l: Crystal Structure of TTHA0275 From Thermus Thermophilus (HB8) in Complex with 5'-Methylthioadenosine in Space Group P21212
Protein crystallography data
The structure of Crystal Structure of TTHA0275 From Thermus Thermophilus (HB8) in Complex with 5'-Methylthioadenosine in Space Group P21212, PDB code: 4x3l
was solved by
H.Demirci,
R.Belardinelli,
G.Jogl,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
38.11 /
1.70
|
Space group
|
P 21 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
111.170,
115.950,
58.680,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
18.5 /
20.7
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of TTHA0275 From Thermus Thermophilus (HB8) in Complex with 5'-Methylthioadenosine in Space Group P21212
(pdb code 4x3l). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the
Crystal Structure of TTHA0275 From Thermus Thermophilus (HB8) in Complex with 5'-Methylthioadenosine in Space Group P21212, PDB code: 4x3l:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
Chlorine binding site 1 out
of 5 in 4x3l
Go back to
Chlorine Binding Sites List in 4x3l
Chlorine binding site 1 out
of 5 in the Crystal Structure of TTHA0275 From Thermus Thermophilus (HB8) in Complex with 5'-Methylthioadenosine in Space Group P21212
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of TTHA0275 From Thermus Thermophilus (HB8) in Complex with 5'-Methylthioadenosine in Space Group P21212 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl302
b:36.0
occ:0.94
|
ND2
|
A:ASN154
|
3.2
|
35.0
|
1.0
|
N
|
A:GLY124
|
3.3
|
29.0
|
1.0
|
CA
|
A:GLY121
|
3.3
|
46.8
|
1.0
|
C
|
A:GLY121
|
3.6
|
48.5
|
1.0
|
O
|
A:GLY121
|
3.7
|
50.9
|
1.0
|
CB
|
A:ASN154
|
3.8
|
32.1
|
1.0
|
CA
|
A:GLY124
|
3.8
|
31.8
|
1.0
|
CG
|
A:GLN150
|
3.9
|
46.8
|
1.0
|
CA
|
A:VAL151
|
3.9
|
30.0
|
1.0
|
OE1
|
A:GLN150
|
4.0
|
66.1
|
1.0
|
CG
|
A:ASN154
|
4.0
|
39.4
|
1.0
|
N
|
A:LEU123
|
4.1
|
38.6
|
1.0
|
O
|
A:GLN150
|
4.2
|
29.2
|
1.0
|
O
|
A:HOH514
|
4.2
|
47.8
|
1.0
|
CB
|
A:VAL151
|
4.3
|
31.2
|
1.0
|
N
|
A:VAL151
|
4.3
|
29.8
|
1.0
|
CB
|
A:LEU123
|
4.3
|
29.3
|
1.0
|
C
|
A:LEU123
|
4.3
|
27.3
|
1.0
|
CD
|
A:GLN150
|
4.3
|
58.2
|
1.0
|
C
|
A:GLN150
|
4.4
|
30.5
|
1.0
|
N
|
A:ASN122
|
4.4
|
38.2
|
1.0
|
CG2
|
A:VAL151
|
4.4
|
33.5
|
1.0
|
CA
|
A:LEU123
|
4.5
|
35.4
|
1.0
|
N
|
A:GLY121
|
4.7
|
64.5
|
1.0
|
C
|
A:ASN122
|
4.9
|
33.7
|
1.0
|
|
Chlorine binding site 2 out
of 5 in 4x3l
Go back to
Chlorine Binding Sites List in 4x3l
Chlorine binding site 2 out
of 5 in the Crystal Structure of TTHA0275 From Thermus Thermophilus (HB8) in Complex with 5'-Methylthioadenosine in Space Group P21212
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of TTHA0275 From Thermus Thermophilus (HB8) in Complex with 5'-Methylthioadenosine in Space Group P21212 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl303
b:49.0
occ:0.87
|
NH2
|
A:ARG57
|
2.9
|
50.0
|
1.0
|
O
|
A:HOH406
|
3.0
|
44.7
|
1.0
|
CZ
|
A:ARG57
|
4.0
|
56.5
|
1.0
|
NH1
|
A:ARG57
|
4.3
|
58.7
|
1.0
|
OE2
|
A:GLU38
|
4.5
|
38.6
|
1.0
|
O
|
A:HOH436
|
4.9
|
66.9
|
1.0
|
|
Chlorine binding site 3 out
of 5 in 4x3l
Go back to
Chlorine Binding Sites List in 4x3l
Chlorine binding site 3 out
of 5 in the Crystal Structure of TTHA0275 From Thermus Thermophilus (HB8) in Complex with 5'-Methylthioadenosine in Space Group P21212
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of TTHA0275 From Thermus Thermophilus (HB8) in Complex with 5'-Methylthioadenosine in Space Group P21212 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl302
b:46.5
occ:1.00
|
O
|
B:HOH408
|
3.0
|
45.5
|
1.0
|
NH2
|
B:ARG57
|
3.1
|
52.9
|
1.0
|
CZ
|
B:ARG57
|
4.1
|
63.8
|
1.0
|
NH1
|
B:ARG57
|
4.3
|
67.5
|
1.0
|
OE2
|
B:GLU38
|
4.5
|
42.3
|
1.0
|
O
|
B:HOH592
|
4.8
|
66.9
|
1.0
|
|
Chlorine binding site 4 out
of 5 in 4x3l
Go back to
Chlorine Binding Sites List in 4x3l
Chlorine binding site 4 out
of 5 in the Crystal Structure of TTHA0275 From Thermus Thermophilus (HB8) in Complex with 5'-Methylthioadenosine in Space Group P21212
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of TTHA0275 From Thermus Thermophilus (HB8) in Complex with 5'-Methylthioadenosine in Space Group P21212 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl303
b:36.8
occ:1.00
|
NH2
|
B:ARG192
|
3.2
|
38.7
|
1.0
|
NE
|
B:ARG192
|
3.3
|
39.1
|
1.0
|
O
|
B:HOH406
|
3.3
|
44.5
|
1.0
|
CZ
|
B:ARG192
|
3.7
|
42.1
|
1.0
|
CG
|
B:GLU191
|
4.1
|
48.1
|
1.0
|
CB
|
B:ARG192
|
4.1
|
34.1
|
1.0
|
CD
|
B:ARG192
|
4.5
|
39.0
|
1.0
|
CG
|
B:ARG192
|
4.5
|
40.2
|
1.0
|
OE1
|
B:GLU191
|
4.6
|
57.2
|
1.0
|
CD
|
B:GLU191
|
4.9
|
54.4
|
1.0
|
CG1
|
B:VAL224
|
4.9
|
49.4
|
1.0
|
NH1
|
B:ARG192
|
5.0
|
44.6
|
1.0
|
|
Chlorine binding site 5 out
of 5 in 4x3l
Go back to
Chlorine Binding Sites List in 4x3l
Chlorine binding site 5 out
of 5 in the Crystal Structure of TTHA0275 From Thermus Thermophilus (HB8) in Complex with 5'-Methylthioadenosine in Space Group P21212
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of TTHA0275 From Thermus Thermophilus (HB8) in Complex with 5'-Methylthioadenosine in Space Group P21212 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl304
b:38.3
occ:0.97
|
N
|
B:GLY124
|
3.3
|
30.5
|
1.0
|
ND2
|
B:ASN154
|
3.3
|
41.7
|
1.0
|
N
|
B:GLY121
|
3.3
|
55.9
|
1.0
|
CA
|
B:GLY121
|
3.5
|
43.9
|
1.0
|
C
|
B:GLY121
|
3.6
|
44.0
|
1.0
|
O
|
B:HOH488
|
3.8
|
45.5
|
1.0
|
CG
|
B:GLN150
|
3.8
|
64.8
|
1.0
|
CG2
|
B:VAL151
|
3.8
|
27.9
|
0.4
|
CB
|
B:ASN154
|
3.8
|
37.2
|
1.0
|
CA
|
B:GLY124
|
3.8
|
28.8
|
1.0
|
O
|
B:GLY121
|
3.9
|
40.2
|
1.0
|
CA
|
B:VAL151
|
3.9
|
32.3
|
0.6
|
CA
|
B:VAL151
|
3.9
|
32.3
|
0.4
|
CG
|
B:ASN154
|
4.0
|
44.4
|
1.0
|
O
|
B:GLN150
|
4.1
|
36.8
|
1.0
|
N
|
B:LEU123
|
4.1
|
31.3
|
1.0
|
N
|
B:VAL151
|
4.2
|
33.5
|
1.0
|
C
|
B:GLN150
|
4.2
|
32.7
|
1.0
|
N
|
B:ASN122
|
4.2
|
40.3
|
1.0
|
CB
|
B:VAL151
|
4.3
|
31.8
|
0.6
|
C
|
B:LEU123
|
4.3
|
28.1
|
1.0
|
CG2
|
B:VAL151
|
4.4
|
31.1
|
0.6
|
CB
|
B:LEU123
|
4.4
|
32.2
|
1.0
|
CD
|
B:GLN150
|
4.4
|
76.7
|
1.0
|
CA
|
B:LEU123
|
4.5
|
33.1
|
1.0
|
C
|
B:PRO120
|
4.5
|
65.4
|
1.0
|
CB
|
B:VAL151
|
4.5
|
31.4
|
0.4
|
CB
|
B:GLN150
|
4.7
|
52.3
|
1.0
|
C
|
B:ASN122
|
4.8
|
34.6
|
1.0
|
CA
|
B:PRO120
|
4.9
|
69.5
|
1.0
|
NE2
|
B:GLN150
|
4.9
|
78.2
|
1.0
|
OE1
|
B:GLN150
|
5.0
|
80.0
|
1.0
|
|
Reference:
H.Demirci,
R.Belardinelli,
G.Jogl.
Crystal Structure of TTHA0275 From Thermus Thermophilus (HB8) To Be Published.
Page generated: Fri Jul 26 03:12:22 2024
|