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Chlorine in PDB 4xdq: Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile

Protein crystallography data

The structure of Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile, PDB code: 4xdq was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.35
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 74.550, 74.550, 95.530, 90.00, 90.00, 90.00
R / Rfree (%) 12.5 / 14.8

Other elements in 4xdq:

The structure of Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile also contains other interesting chemical elements:

Cadmium (Cd) 1 atom
Magnesium (Mg) 1 atom
Calcium (Ca) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile (pdb code 4xdq). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile, PDB code: 4xdq:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4xdq

Go back to Chlorine Binding Sites List in 4xdq
Chlorine binding site 1 out of 2 in the Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:16.0
occ:1.00
NH2 A:ARG107 3.3 14.8 1.0
NH1 A:ARG107 3.4 13.2 1.0
N A:ASP136 3.4 10.4 1.0
O A:HOH461 3.5 33.4 1.0
OD1 A:ASP136 3.6 18.6 1.0
O A:LEU134 3.7 8.7 1.0
CA A:ASN135 3.8 9.8 1.0
CZ A:ARG107 3.8 13.5 1.0
CG A:ASP136 3.8 17.2 1.0
CG2 A:VAL227 4.0 9.6 1.0
C A:ASN135 4.1 9.8 1.0
C A:LEU134 4.3 8.2 1.0
OD2 A:ASP136 4.3 25.4 1.0
CB A:ASP136 4.3 14.6 1.0
CG A:LEU134 4.4 12.9 1.0
CA A:ASP136 4.4 12.7 1.0
N A:ASN135 4.4 8.8 1.0
CG1 A:VAL227 4.6 10.2 1.0
CD2 A:LEU134 4.7 15.7 1.0
CB A:ASN135 4.8 10.2 1.0
CB A:LEU134 4.9 9.8 1.0
CB A:VAL227 4.9 9.6 1.0
CG A:ASN135 5.0 11.9 1.0
OD1 A:ASN135 5.0 15.2 1.0

Chlorine binding site 2 out of 2 in 4xdq

Go back to Chlorine Binding Sites List in 4xdq
Chlorine binding site 2 out of 2 in the Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl305

b:17.9
occ:1.00
CD A:CD302 2.4 11.6 1.0
O A:HOH439 3.1 18.8 1.0
O A:HOH493 3.3 17.2 1.0
OD2 A:ASP254 3.5 9.1 1.0
OD1 A:ASP254 3.7 9.9 1.0
O2 A:BEZ306 3.7 12.3 1.0
CG A:ASP254 4.0 9.3 1.0
O A:HOH422 4.0 20.5 1.0
C A:BEZ306 4.7 12.4 1.0
NH1 A:ARG117 4.7 11.5 1.0
O1 A:BEZ306 4.9 11.6 1.0

Reference:

T.E.Edwards, J.Abendroth, Seattle Structural Genomics Center For Infectious Disease. Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile To Be Published.
Page generated: Sat Dec 12 11:20:09 2020

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