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Chlorine in PDB 4xen: High Pressure Protein Crystallography of Hen Egg White Lysozyme in Complex with Tetra-N-Acetylchitotetraose at 920 Mpa

Enzymatic activity of High Pressure Protein Crystallography of Hen Egg White Lysozyme in Complex with Tetra-N-Acetylchitotetraose at 920 Mpa

All present enzymatic activity of High Pressure Protein Crystallography of Hen Egg White Lysozyme in Complex with Tetra-N-Acetylchitotetraose at 920 Mpa:
3.2.1.17;

Protein crystallography data

The structure of High Pressure Protein Crystallography of Hen Egg White Lysozyme in Complex with Tetra-N-Acetylchitotetraose at 920 Mpa, PDB code: 4xen was solved by H.Yamada, N.Watanabe, T.Nagae, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.11 / 1.55
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 76.152, 76.152, 37.962, 90.00, 90.00, 90.00
R / Rfree (%) 16.5 / 21

Other elements in 4xen:

The structure of High Pressure Protein Crystallography of Hen Egg White Lysozyme in Complex with Tetra-N-Acetylchitotetraose at 920 Mpa also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the High Pressure Protein Crystallography of Hen Egg White Lysozyme in Complex with Tetra-N-Acetylchitotetraose at 920 Mpa (pdb code 4xen). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the High Pressure Protein Crystallography of Hen Egg White Lysozyme in Complex with Tetra-N-Acetylchitotetraose at 920 Mpa, PDB code: 4xen:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 4xen

Go back to Chlorine Binding Sites List in 4xen
Chlorine binding site 1 out of 4 in the High Pressure Protein Crystallography of Hen Egg White Lysozyme in Complex with Tetra-N-Acetylchitotetraose at 920 Mpa


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of High Pressure Protein Crystallography of Hen Egg White Lysozyme in Complex with Tetra-N-Acetylchitotetraose at 920 Mpa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:18.2
occ:1.00
 NH2 A:ARG14 3.1 13.2 0.5
CE1 A:HIS15 3.1 13.6 1.0
N A:ILE88 3.3 9.9 1.0
O A:HOH422 3.4 29.8 1.0
CG1 A:ILE88 3.5 10.9 1.0
O A:HOH342 3.6 23.1 1.0
NH1 A:ARG14 3.6 13.2 0.5
CZ A:ARG14 3.7 12.2 0.5
OD1 A:ASP87 3.8 20.0 1.0
CA A:ASP87 3.8 14.6 1.0
NH2 A:ARG14 3.9 13.8 0.5
ND1 A:HIS15 3.9 16.4 1.0
CB A:ALA11 3.9 8.1 1.0
C A:ASP87 4.0 12.6 1.0
NE2 A:HIS15 4.2 16.9 1.0
CG A:ASP87 4.2 22.3 1.0
CA A:ILE88 4.2 9.9 1.0
CZ A:PHE3 4.3 10.5 1.0
CB A:ILE88 4.3 10.2 1.0
NE A:ARG14 4.3 12.4 0.5
O A:SER86 4.3 15.7 1.0
CZ A:ARG14 4.4 12.5 0.5
CD1 A:ILE88 4.6 11.6 1.0
N A:THR89 4.6 10.0 1.0
CB A:ASP87 4.6 16.6 1.0
CG2 A:ILE88 4.7 10.8 1.0
OD2 A:ASP87 4.7 27.0 1.0
C A:ILE88 4.7 9.0 1.0
CE2 A:PHE3 4.8 9.7 1.0
NE A:ARG14 4.8 12.7 0.5
CA A:ALA11 4.9 7.7 1.0
N A:ASP87 4.9 14.5 1.0

Chlorine binding site 2 out of 4 in 4xen

Go back to Chlorine Binding Sites List in 4xen
Chlorine binding site 2 out of 4 in the High Pressure Protein Crystallography of Hen Egg White Lysozyme in Complex with Tetra-N-Acetylchitotetraose at 920 Mpa


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of High Pressure Protein Crystallography of Hen Egg White Lysozyme in Complex with Tetra-N-Acetylchitotetraose at 920 Mpa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl207

b:18.2
occ:1.00
 OH A:TYR23 2.9 9.0 1.0
O A:HOH383 3.1 22.9 1.0
O A:HOH350 3.2 25.2 1.0
O A:HOH341 3.4 14.4 1.0
CZ A:TYR23 3.6 6.8 1.0
CE2 A:TYR23 3.6 7.2 1.0
CA A:GLY104 4.1 8.7 1.0
O A:ARG21 4.4 11.3 0.5
O A:ARG21 4.4 11.2 0.5
N A:GLY104 4.7 9.7 1.0
O A:HOH368 4.7 18.1 1.0
CD2 A:TYR23 4.8 6.7 1.0
CE1 A:TYR23 4.8 6.6 1.0

Chlorine binding site 3 out of 4 in 4xen

Go back to Chlorine Binding Sites List in 4xen
Chlorine binding site 3 out of 4 in the High Pressure Protein Crystallography of Hen Egg White Lysozyme in Complex with Tetra-N-Acetylchitotetraose at 920 Mpa


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of High Pressure Protein Crystallography of Hen Egg White Lysozyme in Complex with Tetra-N-Acetylchitotetraose at 920 Mpa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl208

b:25.9
occ:1.00
 N A:GLY26 3.0 8.5 1.0
O A:HOH442 3.0 32.3 1.0
OG A:SER24 3.1 13.4 1.0
CB A:SER24 3.4 9.7 1.0
CA A:GLN121 3.4 14.6 0.5
O A:HOH399 3.5 33.8 1.0
CA A:GLY26 3.5 7.4 1.0
CA A:GLN121 3.7 15.7 0.5
CB A:GLN121 3.7 16.5 0.5
N A:LEU25 3.9 6.9 1.0
N A:GLN121 4.0 13.8 0.5
CG A:GLN121 4.0 18.1 0.5
N A:GLN121 4.0 14.2 0.5
CG1 A:ILE124 4.0 15.5 1.0
C A:SER24 4.1 8.1 1.0
C A:LEU25 4.2 7.6 1.0
O A:VAL120 4.2 11.7 1.0
C A:VAL120 4.3 14.8 1.0
CA A:SER24 4.4 8.4 1.0
CA A:LEU25 4.5 7.2 1.0
CG2 A:VAL120 4.5 15.6 1.0
O A:SER24 4.5 9.7 1.0
C A:GLN121 4.6 14.3 0.5
CB A:GLN121 4.6 17.1 0.5
C A:GLY26 4.6 7.7 1.0
O A:GLN121 4.6 15.1 0.5
C A:GLN121 4.6 13.7 0.5
N A:ASN27 4.7 8.0 1.0
CD A:GLN121 4.8 21.6 0.5
CB A:LEU25 4.8 8.2 1.0
O A:GLN121 4.8 13.7 0.5
CB A:ILE124 5.0 13.0 1.0

Chlorine binding site 4 out of 4 in 4xen

Go back to Chlorine Binding Sites List in 4xen
Chlorine binding site 4 out of 4 in the High Pressure Protein Crystallography of Hen Egg White Lysozyme in Complex with Tetra-N-Acetylchitotetraose at 920 Mpa


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of High Pressure Protein Crystallography of Hen Egg White Lysozyme in Complex with Tetra-N-Acetylchitotetraose at 920 Mpa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl209

b:21.2
occ:0.50
 O A:HOH347 3.0 15.4 1.0
NH1 A:ARG14 3.2 13.2 0.5
CD A:ARG14 3.6 11.4 0.5
CB A:ALA10 3.7 9.6 1.0
C A:ALA10 3.9 8.1 1.0
O A:ALA10 3.9 9.6 1.0
N A:ALA11 4.0 8.1 1.0
NE A:ARG14 4.1 12.4 0.5
CD A:ARG14 4.1 10.9 0.5
CZ A:ARG14 4.3 12.2 0.5
CA A:ALA11 4.3 7.7 1.0
CA A:ALA10 4.4 8.7 1.0
CG A:ARG14 4.5 11.2 0.5
NE A:ARG14 4.6 12.7 0.5
O A:HOH335 4.7 17.6 1.0
CB A:ALA11 4.8 8.1 1.0
CG A:ARG14 4.9 10.8 0.5
O A:HOH366 5.0 28.4 1.0
CB A:ARG14 5.0 10.7 0.5
O A:GLU7 5.0 10.0 1.0
CB A:ARG14 5.0 10.6 0.5

Reference:

H.Yamada, T.Nagae, N.Watanabe. High Pressure Protein Crystallography of Hen Egg White Lysozyme Acta Crystallogr.,Sect.D V. 71 2015.
ISSN: ESSN 1399-0047
DOI: 10.1107/S1399004715000292
Page generated: Fri Jul 26 03:24:12 2024

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