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Chlorine in PDB 4xhz: Crystal Structure of Human Protocadherin-15 EC8-10

Protein crystallography data

The structure of Crystal Structure of Human Protocadherin-15 EC8-10, PDB code: 4xhz was solved by R.Araya-Secchi, M.Sotomayor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 136.77 / 2.80
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 157.929, 157.929, 142.898, 90.00, 90.00, 120.00
R / Rfree (%) 17 / 20

Other elements in 4xhz:

The structure of Crystal Structure of Human Protocadherin-15 EC8-10 also contains other interesting chemical elements:

Calcium (Ca) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human Protocadherin-15 EC8-10 (pdb code 4xhz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Human Protocadherin-15 EC8-10, PDB code: 4xhz:

Chlorine binding site 1 out of 1 in 4xhz

Go back to Chlorine Binding Sites List in 4xhz
Chlorine binding site 1 out of 1 in the Crystal Structure of Human Protocadherin-15 EC8-10


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Protocadherin-15 EC8-10 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl2004

b:90.3
occ:1.00
N A:VAL946 3.4 58.9 1.0
NH2 A:ARG970 3.4 51.6 1.0
CG2 A:VAL946 3.5 53.5 1.0
CG1 A:VAL946 3.6 57.2 1.0
N A:VAL960 3.6 51.7 1.0
O A:VAL960 3.8 64.7 1.0
CG1 A:VAL960 3.9 53.7 1.0
CB A:GLU959 3.9 59.5 1.0
CB A:VAL946 4.0 61.6 1.0
CA A:GLU959 4.0 55.9 1.0
CA A:ARG945 4.2 65.2 1.0
C A:ARG945 4.2 64.5 1.0
CA A:VAL946 4.3 62.8 1.0
C A:GLU959 4.3 56.5 1.0
CZ A:ARG970 4.5 60.7 1.0
CA A:VAL960 4.5 55.2 1.0
CB A:ARG945 4.6 62.7 1.0
C A:VAL960 4.6 57.9 1.0
NH1 A:ARG970 4.7 62.3 1.0
CB A:VAL960 4.8 54.8 1.0

Reference:

R.Araya-Secchi, B.L.Neel, M.Sotomayor. An Elastic Element in the Protocadherin-15 Tip Link of the Inner Ear. Nat Commun V. 7 13458 2016.
ISSN: ESSN 2041-1723
PubMed: 27857071
DOI: 10.1038/NCOMMS13458
Page generated: Sat Dec 12 11:20:37 2020

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