Atomistry » Chlorine » PDB 4xg8-4xpa » 4xjd
Atomistry »
  Chlorine »
    PDB 4xg8-4xpa »
      4xjd »

Chlorine in PDB 4xjd: X-Ray Structure of LYSOZYME2

Enzymatic activity of X-Ray Structure of LYSOZYME2

All present enzymatic activity of X-Ray Structure of LYSOZYME2:
3.2.1.17;

Protein crystallography data

The structure of X-Ray Structure of LYSOZYME2, PDB code: 4xjd was solved by C.Y.Huang, V.Olieric, K.Diederichs, M.Wang, M.Caffrey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.66 / 1.80
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.510, 77.510, 36.750, 90.00, 90.00, 90.00
R / Rfree (%) 21.6 / 26.7

Other elements in 4xjd:

The structure of X-Ray Structure of LYSOZYME2 also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the X-Ray Structure of LYSOZYME2 (pdb code 4xjd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the X-Ray Structure of LYSOZYME2, PDB code: 4xjd:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7;

Chlorine binding site 1 out of 7 in 4xjd

Go back to Chlorine Binding Sites List in 4xjd
Chlorine binding site 1 out of 7 in the X-Ray Structure of LYSOZYME2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Structure of LYSOZYME2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:26.9
occ:0.79
 OH A:TYR23 3.0 19.8 1.0
CE2 A:TYR23 3.6 21.7 1.0
CZ A:TYR23 3.7 18.3 1.0
O A:HOH306 3.8 26.0 1.0
CA A:GLY104 4.0 20.8 1.0
O A:ARG21 4.4 27.9 1.0
O A:HOH310 4.5 33.0 1.0
N A:GLY104 4.6 22.8 1.0
CD2 A:TYR23 4.8 21.6 1.0
CD A:ARG21 4.8 40.5 1.0
NH1 A:ARG21 4.8 45.1 1.0
CE1 A:TYR23 4.9 18.9 1.0

Chlorine binding site 2 out of 7 in 4xjd

Go back to Chlorine Binding Sites List in 4xjd
Chlorine binding site 2 out of 7 in the X-Ray Structure of LYSOZYME2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of X-Ray Structure of LYSOZYME2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:31.3
occ:0.66
 OG A:SER24 2.6 31.2 1.0
N A:GLY26 2.9 24.3 1.0
CB A:SER24 3.3 28.3 1.0
CA A:GLN121 3.4 31.2 1.0
CA A:GLY26 3.4 23.9 1.0
CB A:GLN121 3.6 38.7 1.0
N A:LEU25 3.8 25.6 1.0
CD1 A:ILE124 3.8 36.7 1.0
C A:SER24 3.9 26.0 1.0
N A:GLN121 4.0 34.2 1.0
C A:LEU25 4.1 27.3 1.0
CA A:SER24 4.2 25.5 1.0
CG1 A:ILE124 4.2 34.8 1.0
O A:SER24 4.3 26.2 1.0
O A:VAL120 4.3 30.4 1.0
CA A:LEU25 4.3 25.5 1.0
C A:VAL120 4.4 30.5 1.0
CG2 A:VAL120 4.5 24.5 1.0
C A:GLY26 4.6 21.8 1.0
CB A:LEU25 4.6 22.0 1.0
O A:HOH332 4.6 27.6 1.0
C A:GLN121 4.6 32.9 1.0
N A:ASN27 4.7 21.7 1.0
O A:GLN121 4.8 33.7 1.0

Chlorine binding site 3 out of 7 in 4xjd

Go back to Chlorine Binding Sites List in 4xjd
Chlorine binding site 3 out of 7 in the X-Ray Structure of LYSOZYME2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of X-Ray Structure of LYSOZYME2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:41.7
occ:0.57
 O A:HOH340 2.2 35.5 1.0
OD1 A:ASN65 3.0 38.8 1.0
N A:THR69 3.2 36.5 1.0
N A:ARG68 3.3 26.4 1.0
N A:GLY67 3.4 30.2 1.0
O A:THR69 3.4 39.2 1.0
C A:GLY67 3.5 32.3 1.0
CA A:GLY67 3.6 29.1 1.0
OD1 A:ASP66 3.8 28.8 1.0
OG A:SER72 3.9 42.9 1.0
C A:THR69 3.9 41.0 1.0
CA A:THR69 3.9 34.2 1.0
O A:HOH331 4.0 37.8 1.0
CG A:ASN65 4.0 32.4 1.0
C A:ARG68 4.1 35.0 1.0
CA A:ARG68 4.1 30.9 1.0
CB A:THR69 4.2 34.5 1.0
N A:ASP66 4.2 28.5 1.0
O A:GLY67 4.3 30.9 1.0
C A:ASP66 4.4 29.2 1.0
OG1 A:THR69 4.5 30.7 1.0
NA A:NA208 4.7 34.2 0.9
ND2 A:ASN65 4.8 34.9 1.0
CA A:ASP66 4.9 27.5 1.0
CA A:ASN65 4.9 26.0 1.0
CB A:ASN65 5.0 29.9 1.0
CG A:ASP66 5.0 28.7 1.0
C A:ASN65 5.0 26.5 1.0

Chlorine binding site 4 out of 7 in 4xjd

Go back to Chlorine Binding Sites List in 4xjd
Chlorine binding site 4 out of 7 in the X-Ray Structure of LYSOZYME2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of X-Ray Structure of LYSOZYME2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:33.6
occ:0.76
 OD1 A:ASP87 3.0 40.4 1.0
N A:ILE88 3.3 27.6 1.0
NE2 A:HIS15 3.4 32.1 1.0
NH2 A:ARG14 3.4 39.9 1.0
CG1 A:ILE88 3.6 27.9 1.0
NH1 A:ARG14 3.8 37.0 1.0
CA A:ASP87 4.0 30.8 1.0
CZ A:ARG14 4.0 36.6 1.0
CG A:ASP87 4.0 33.9 1.0
C A:ASP87 4.1 31.8 1.0
CD2 A:HIS15 4.2 26.9 1.0
CA A:ILE88 4.2 26.1 1.0
CB A:ILE88 4.4 26.0 1.0
CE1 A:HIS15 4.4 31.9 1.0
CB A:ASP87 4.4 31.8 1.0
CB A:ALA11 4.4 29.9 1.0
N A:THR89 4.5 23.5 1.0
CD1 A:ILE88 4.6 29.0 1.0
OG1 A:THR89 4.6 28.7 1.0
C A:ILE88 4.7 27.3 1.0
CG2 A:ILE88 4.7 26.4 1.0

Chlorine binding site 5 out of 7 in 4xjd

Go back to Chlorine Binding Sites List in 4xjd
Chlorine binding site 5 out of 7 in the X-Ray Structure of LYSOZYME2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of X-Ray Structure of LYSOZYME2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:55.4
occ:0.69
 NZ A:LYS33 3.5 39.4 1.0
O A:HOH305 4.1 35.3 0.9
CE A:LYS33 4.1 33.0 1.0
CE2 A:PHE38 4.3 30.2 1.0
CD A:LYS33 4.5 27.9 1.0
CD A:ARG5 4.6 35.5 1.0
CZ3 A:TRP123 4.8 28.6 1.0
CB A:ARG5 4.8 31.1 1.0

Chlorine binding site 6 out of 7 in 4xjd

Go back to Chlorine Binding Sites List in 4xjd
Chlorine binding site 6 out of 7 in the X-Ray Structure of LYSOZYME2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of X-Ray Structure of LYSOZYME2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:44.9
occ:0.67
 N A:ASN74 3.1 33.7 1.0
NE A:ARG73 3.2 44.6 1.0
CB A:ARG73 3.6 41.2 1.0
NH2 A:ARG73 3.7 37.8 1.0
C A:ASN74 3.7 35.3 1.0
CD2 A:LEU75 3.8 40.0 1.0
CZ A:ARG73 3.8 40.7 1.0
O A:ASN74 3.9 36.8 1.0
CA A:ARG73 3.9 39.3 1.0
CA A:ASN74 3.9 31.7 1.0
C A:ARG73 4.0 37.4 1.0
CD A:ARG73 4.1 43.2 1.0
N A:LEU75 4.1 37.7 1.0
CB A:ASN74 4.4 31.4 1.0
CG A:ARG73 4.4 43.8 1.0
CG A:LEU75 4.6 36.9 1.0
CA A:LEU75 4.6 36.6 1.0

Chlorine binding site 7 out of 7 in 4xjd

Go back to Chlorine Binding Sites List in 4xjd
Chlorine binding site 7 out of 7 in the X-Ray Structure of LYSOZYME2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of X-Ray Structure of LYSOZYME2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl207

b:31.0
occ:0.80
 NH1 A:ARG68 3.3 28.8 1.0
CD A:ARG68 3.8 30.9 1.0
CZ A:ARG68 4.2 31.3 1.0
NE A:ARG68 4.4 26.7 1.0
NH2 A:ARG45 5.0 38.2 1.0

Reference:

C.Y.Huang, V.Olieric, P.Ma, E.Panepucci, K.Diederichs, M.Wang, M.Caffrey. In Meso in Situ Serial X-Ray Crystallography of Soluble and Membrane Proteins. Acta Crystallogr.,Sect.D V. 71 1238 2015.
ISSN: ESSN 1399-0047
PubMed: 26057665
DOI: 10.1107/S1399004715005210
Page generated: Fri Jul 26 03:29:33 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy