Atomistry » Chlorine » PDB 4xg0-4xp9 » 4xji
Atomistry »
  Chlorine »
    PDB 4xg0-4xp9 »
      4xji »

Chlorine in PDB 4xji: X-Ray Structure of LYSOZYMES2

Enzymatic activity of X-Ray Structure of LYSOZYMES2

All present enzymatic activity of X-Ray Structure of LYSOZYMES2:
3.2.1.17;

Protein crystallography data

The structure of X-Ray Structure of LYSOZYMES2, PDB code: 4xji was solved by C.Y.Huang, V.Olieric, K.Diederichs, M.Wang, M.Caffrey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.36 / 2.00
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.710, 78.710, 37.330, 90.00, 90.00, 90.00
R / Rfree (%) 16.4 / 21

Other elements in 4xji:

The structure of X-Ray Structure of LYSOZYMES2 also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the X-Ray Structure of LYSOZYMES2 (pdb code 4xji). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the X-Ray Structure of LYSOZYMES2, PDB code: 4xji:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Chlorine binding site 1 out of 8 in 4xji

Go back to Chlorine Binding Sites List in 4xji
Chlorine binding site 1 out of 8 in the X-Ray Structure of LYSOZYMES2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Structure of LYSOZYMES2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:18.3
occ:1.00
 OH A:TYR23 3.0 13.8 1.0
O A:HOH320 3.4 17.6 1.0
CZ A:TYR23 3.6 14.0 1.0
CE2 A:TYR23 3.7 14.1 1.0
CA A:GLY104 4.1 15.8 1.0
O A:ARG21 4.6 15.2 1.0
N A:GLY104 4.7 13.2 1.0
CE1 A:TYR23 4.8 12.7 1.0
CD2 A:TYR23 4.9 11.1 1.0

Chlorine binding site 2 out of 8 in 4xji

Go back to Chlorine Binding Sites List in 4xji
Chlorine binding site 2 out of 8 in the X-Ray Structure of LYSOZYMES2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of X-Ray Structure of LYSOZYMES2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:22.6
occ:1.00
 OG A:SER24 3.0 17.9 1.0
N A:GLY26 3.2 12.6 1.0
CA A:GLY26 3.4 14.4 1.0
CB A:SER24 3.4 23.8 1.0
CA A:GLN121 3.7 18.9 1.0
CD1 A:ILE124 3.8 28.6 1.0
N A:GLN121 4.1 20.1 1.0
CB A:GLN121 4.1 25.3 1.0
CG1 A:ILE124 4.2 20.3 1.0
N A:LEU25 4.3 16.2 1.0
CG A:GLN121 4.3 25.8 1.0
C A:SER24 4.4 19.0 1.0
C A:LEU25 4.4 15.6 1.0
C A:VAL120 4.4 18.8 1.0
CG2 A:VAL120 4.4 18.1 1.0
O A:VAL120 4.4 19.1 1.0
C A:GLY26 4.5 14.5 1.0
CA A:SER24 4.5 15.0 1.0
N A:ASN27 4.7 12.4 1.0
CA A:LEU25 4.8 16.6 1.0
O A:SER24 4.8 14.2 1.0
C A:GLN121 4.9 19.1 1.0

Chlorine binding site 3 out of 8 in 4xji

Go back to Chlorine Binding Sites List in 4xji
Chlorine binding site 3 out of 8 in the X-Ray Structure of LYSOZYMES2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of X-Ray Structure of LYSOZYMES2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:23.9
occ:1.00
 O A:HOH348 3.0 30.4 1.0
N A:THR69 3.0 17.6 1.0
O A:HOH358 3.2 14.6 1.0
O A:THR69 3.2 21.6 1.0
C A:THR69 3.5 22.4 1.0
N A:ARG68 3.5 15.9 1.0
C A:GLY67 3.6 20.2 1.0
OG A:SER72 3.6 26.3 1.0
CA A:THR69 3.7 21.2 1.0
OD1 A:ASN65 3.7 23.4 1.0
CA A:GLY67 3.7 17.9 1.0
N A:GLY67 3.8 15.5 1.0
O A:HOH394 3.8 26.1 0.9
O A:HOH357 4.0 18.1 1.0
C A:ARG68 4.1 21.4 1.0
CB A:THR69 4.1 18.1 1.0
O A:GLY67 4.1 22.3 1.0
CA A:ARG68 4.2 15.2 1.0
OD1 A:ASP66 4.3 15.4 1.0
N A:PRO70 4.3 19.4 1.0
OG1 A:THR69 4.7 15.1 1.0
NA A:NA209 4.8 24.8 1.0
CB A:SER72 4.8 23.1 1.0
CA A:PRO70 4.8 27.8 1.0
CG A:ASN65 4.9 22.4 1.0
C A:ASP66 4.9 16.2 1.0
N A:ASP66 4.9 15.1 1.0

Chlorine binding site 4 out of 8 in 4xji

Go back to Chlorine Binding Sites List in 4xji
Chlorine binding site 4 out of 8 in the X-Ray Structure of LYSOZYMES2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of X-Ray Structure of LYSOZYMES2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:35.5
occ:1.00
 N A:ILE88 3.3 18.1 1.0
O A:HOH371 3.5 22.7 0.9
CG1 A:ILE88 3.7 16.9 1.0
CA A:ASP87 3.8 20.7 1.0
O A:SER86 4.0 25.2 1.0
CE1 A:HIS15 4.0 20.9 1.0
OD1 A:ASP87 4.0 30.6 1.0
C A:ASP87 4.0 19.2 1.0
CG2 A:ILE88 4.1 20.2 1.0
CB A:ALA11 4.2 19.1 1.0
O A:HOH339 4.2 31.2 0.7
CB A:ILE88 4.2 17.7 1.0
CZ A:PHE3 4.2 23.7 1.0
CA A:ILE88 4.3 16.9 1.0
CG A:ASP87 4.4 37.0 1.0
CD1 A:ILE88 4.5 15.5 1.0
ND1 A:HIS15 4.7 24.9 1.0
CB A:ASP87 4.7 26.8 1.0
N A:ASP87 4.8 21.1 1.0
C A:SER86 4.8 23.4 1.0
NE2 A:HIS15 4.8 27.3 1.0
CE2 A:PHE3 4.9 20.1 1.0
NH1 A:ARG14 4.9 40.5 1.0

Chlorine binding site 5 out of 8 in 4xji

Go back to Chlorine Binding Sites List in 4xji
Chlorine binding site 5 out of 8 in the X-Ray Structure of LYSOZYMES2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of X-Ray Structure of LYSOZYMES2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:45.0
occ:1.00
 CE2 A:PHE38 3.7 20.6 1.0
CZ3 A:TRP123 3.8 19.6 1.0
CB A:ARG5 4.1 20.3 1.0
CD A:ARG5 4.1 19.0 1.0
NZ A:LYS33 4.3 24.2 1.0
CZ A:PHE38 4.5 14.9 1.0
CE A:LYS33 4.5 21.5 1.0
CG A:ARG5 4.6 19.2 1.0
CD A:LYS33 4.6 17.4 1.0
NE A:ARG5 4.6 18.7 1.0
CD2 A:PHE38 4.6 15.3 1.0
CE3 A:TRP123 4.7 19.4 1.0
CH2 A:TRP123 4.7 24.9 1.0

Chlorine binding site 6 out of 8 in 4xji

Go back to Chlorine Binding Sites List in 4xji
Chlorine binding site 6 out of 8 in the X-Ray Structure of LYSOZYMES2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of X-Ray Structure of LYSOZYMES2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:64.3
occ:1.00
 O A:HOH381 2.8 25.7 1.0
ND2 A:ASN65 3.2 20.4 1.0
CB A:PRO79 3.7 15.3 1.0
CA A:PRO79 3.7 17.4 1.0
N A:PRO79 3.9 19.3 1.0
CB A:ASN65 3.9 13.7 1.0
CG A:ASN65 4.0 22.4 1.0
CD A:PRO79 4.1 19.5 1.0
O A:ASN65 4.3 14.8 1.0
CG A:PRO79 4.4 20.4 1.0
C A:ILE78 4.5 16.8 1.0
O A:ILE78 4.7 14.8 1.0
ND2 A:ASN74 4.8 17.4 1.0
C A:ASN65 4.9 11.7 1.0
CA A:ASN65 4.9 14.6 1.0
O A:HOH338 5.0 14.4 1.0

Chlorine binding site 7 out of 8 in 4xji

Go back to Chlorine Binding Sites List in 4xji
Chlorine binding site 7 out of 8 in the X-Ray Structure of LYSOZYMES2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of X-Ray Structure of LYSOZYMES2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl207

b:49.8
occ:1.00
 N A:ASN74 2.8 20.0 1.0
NH1 A:ARG73 3.0 48.9 1.0
C A:ASN74 3.4 14.8 1.0
CB A:ARG73 3.6 25.7 1.0
O A:ASN74 3.6 18.1 1.0
CA A:ASN74 3.6 16.6 1.0
CA A:ARG73 3.7 24.9 1.0
C A:ARG73 3.7 24.9 1.0
CD A:ARG73 3.8 36.3 1.0
N A:LEU75 3.9 18.3 1.0
CD2 A:LEU75 3.9 27.3 1.0
CZ A:ARG73 4.0 45.8 1.0
CB A:ASN74 4.0 16.8 1.0
CG A:ARG73 4.3 31.1 1.0
NE A:ARG73 4.3 45.2 1.0
CA A:LEU75 4.4 21.7 1.0
CG A:LEU75 4.7 21.6 1.0
O A:ARG73 4.9 23.8 1.0

Chlorine binding site 8 out of 8 in 4xji

Go back to Chlorine Binding Sites List in 4xji
Chlorine binding site 8 out of 8 in the X-Ray Structure of LYSOZYMES2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of X-Ray Structure of LYSOZYMES2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl208

b:41.0
occ:1.00
 NH1 A:ARG68 2.9 20.5 1.0
CD A:ARG68 3.5 21.1 1.0
CZ A:ARG68 3.9 25.9 1.0
NE A:ARG68 4.1 21.2 1.0
CG A:ARG68 4.8 20.5 1.0
NH1 A:ARG45 4.9 26.4 1.0
CB A:ARG68 4.9 17.3 1.0

Reference:

C.Y.Huang, V.Olieric, P.Ma, E.Panepucci, K.Diederichs, M.Wang, M.Caffrey. In Meso in Situ Serial X-Ray Crystallography of Soluble and Membrane Proteins. Acta Crystallogr.,Sect.D V. 71 1238 2015.
ISSN: ESSN 1399-0047
PubMed: 26057665
DOI: 10.1107/S1399004715005210
Page generated: Sat Dec 12 11:20:43 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy