Chlorine in PDB 4xk2: Crystal Structure of Aldo-Keto Reductase From Polaromonas Sp. JS666
Protein crystallography data
The structure of Crystal Structure of Aldo-Keto Reductase From Polaromonas Sp. JS666, PDB code: 4xk2
was solved by
O.A.Gasiorowska,
K.B.Handing,
I.G.Shabalin,
P.Sroka,
B.S.Hillerich,
J.Bonanno,
R.Seidel,
S.C.Almo,
W.Minor,
New York Structural Genomicsresearch Consortium (Nysgrc),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
50.00 /
1.90
|
Space group
|
I 4 2 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
105.110,
105.110,
479.569,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
16.1 /
18.5
|
Other elements in 4xk2:
The structure of Crystal Structure of Aldo-Keto Reductase From Polaromonas Sp. JS666 also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Aldo-Keto Reductase From Polaromonas Sp. JS666
(pdb code 4xk2). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the
Crystal Structure of Aldo-Keto Reductase From Polaromonas Sp. JS666, PDB code: 4xk2:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
Chlorine binding site 1 out
of 5 in 4xk2
Go back to
Chlorine Binding Sites List in 4xk2
Chlorine binding site 1 out
of 5 in the Crystal Structure of Aldo-Keto Reductase From Polaromonas Sp. JS666
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Aldo-Keto Reductase From Polaromonas Sp. JS666 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl401
b:41.2
occ:1.00
|
O
|
A:HOH825
|
3.1
|
69.7
|
1.0
|
O
|
A:HOH862
|
3.2
|
60.8
|
1.0
|
N
|
A:TRP217
|
3.3
|
47.3
|
1.0
|
N
|
A:LEU215
|
3.3
|
35.4
|
1.0
|
CA
|
A:SER213
|
3.5
|
33.7
|
1.0
|
CB
|
A:LEU215
|
3.5
|
39.1
|
1.0
|
N
|
A:GLY218
|
3.6
|
49.8
|
1.0
|
C
|
A:SER213
|
3.6
|
32.9
|
1.0
|
CA
|
A:TRP217
|
3.6
|
50.4
|
1.0
|
CA
|
A:LEU215
|
3.7
|
38.1
|
1.0
|
C
|
A:LEU215
|
3.7
|
40.0
|
1.0
|
N
|
A:GLY216
|
3.8
|
40.6
|
1.0
|
N
|
A:PRO214
|
3.9
|
32.7
|
1.0
|
O
|
A:SER213
|
4.0
|
33.1
|
1.0
|
CB
|
A:SER213
|
4.0
|
35.1
|
1.0
|
O
|
A:HOH877
|
4.1
|
44.2
|
0.5
|
CD
|
A:PRO214
|
4.1
|
32.6
|
1.0
|
C
|
A:TRP217
|
4.1
|
50.6
|
1.0
|
C
|
A:GLY216
|
4.3
|
44.9
|
1.0
|
CG
|
A:LEU215
|
4.3
|
39.9
|
1.0
|
OG
|
A:SER213
|
4.3
|
37.0
|
1.0
|
O
|
A:LEU215
|
4.4
|
40.9
|
1.0
|
C
|
A:PRO214
|
4.4
|
33.9
|
1.0
|
O
|
A:HOH878
|
4.5
|
72.1
|
1.0
|
CA
|
A:GLY216
|
4.6
|
42.9
|
1.0
|
CA
|
A:GLY218
|
4.7
|
50.7
|
1.0
|
N
|
A:SER213
|
4.8
|
32.2
|
1.0
|
CA
|
A:PRO214
|
4.8
|
32.6
|
1.0
|
CG
|
A:PRO214
|
4.8
|
32.4
|
1.0
|
CD1
|
A:LEU215
|
4.9
|
41.0
|
1.0
|
|
Chlorine binding site 2 out
of 5 in 4xk2
Go back to
Chlorine Binding Sites List in 4xk2
Chlorine binding site 2 out
of 5 in the Crystal Structure of Aldo-Keto Reductase From Polaromonas Sp. JS666
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Aldo-Keto Reductase From Polaromonas Sp. JS666 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl402
b:33.9
occ:1.00
|
O
|
A:HOH609
|
3.0
|
29.8
|
1.0
|
O
|
A:HOH598
|
3.1
|
35.9
|
1.0
|
NE2
|
A:GLN138
|
3.2
|
28.4
|
1.0
|
CG
|
A:PRO135
|
4.0
|
27.9
|
1.0
|
CB
|
A:GLN138
|
4.1
|
27.9
|
1.0
|
CG
|
A:GLN138
|
4.1
|
28.2
|
1.0
|
CD
|
A:GLN138
|
4.1
|
28.4
|
1.0
|
CD
|
A:PRO135
|
4.4
|
27.8
|
1.0
|
O
|
A:HOH615
|
4.8
|
42.4
|
1.0
|
CB
|
A:PRO135
|
4.9
|
28.0
|
1.0
|
|
Chlorine binding site 3 out
of 5 in 4xk2
Go back to
Chlorine Binding Sites List in 4xk2
Chlorine binding site 3 out
of 5 in the Crystal Structure of Aldo-Keto Reductase From Polaromonas Sp. JS666
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Aldo-Keto Reductase From Polaromonas Sp. JS666 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl401
b:66.1
occ:1.00
|
N
|
B:LEU215
|
3.2
|
68.7
|
1.0
|
CB
|
B:LEU215
|
3.4
|
74.0
|
1.0
|
N
|
B:TRP217
|
3.4
|
83.0
|
1.0
|
CA
|
B:SER213
|
3.5
|
61.7
|
1.0
|
C
|
B:SER213
|
3.5
|
63.2
|
1.0
|
CA
|
B:LEU215
|
3.6
|
72.8
|
1.0
|
N
|
B:GLY218
|
3.7
|
84.5
|
1.0
|
C
|
B:LEU215
|
3.7
|
73.7
|
1.0
|
N
|
B:GLY216
|
3.7
|
74.2
|
1.0
|
CA
|
B:TRP217
|
3.8
|
87.5
|
1.0
|
N
|
B:PRO214
|
3.8
|
63.7
|
1.0
|
O
|
B:HOH676
|
3.9
|
65.5
|
1.0
|
O
|
B:SER213
|
3.9
|
62.8
|
1.0
|
CD
|
B:PRO214
|
4.0
|
64.7
|
1.0
|
CB
|
B:SER213
|
4.1
|
63.9
|
1.0
|
CG
|
B:LEU215
|
4.1
|
75.7
|
1.0
|
C
|
B:TRP217
|
4.2
|
85.8
|
1.0
|
C
|
B:PRO214
|
4.3
|
65.8
|
1.0
|
C
|
B:GLY216
|
4.4
|
79.1
|
1.0
|
O
|
B:LEU215
|
4.4
|
74.7
|
1.0
|
OG
|
B:SER213
|
4.4
|
67.8
|
1.0
|
CA
|
B:GLY216
|
4.6
|
75.7
|
1.0
|
CD1
|
B:LEU215
|
4.6
|
79.2
|
1.0
|
CG
|
B:PRO214
|
4.6
|
64.9
|
1.0
|
CA
|
B:PRO214
|
4.7
|
63.8
|
1.0
|
N
|
B:SER213
|
4.7
|
59.5
|
1.0
|
CA
|
B:GLY218
|
4.7
|
84.3
|
1.0
|
|
Chlorine binding site 4 out
of 5 in 4xk2
Go back to
Chlorine Binding Sites List in 4xk2
Chlorine binding site 4 out
of 5 in the Crystal Structure of Aldo-Keto Reductase From Polaromonas Sp. JS666
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Aldo-Keto Reductase From Polaromonas Sp. JS666 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl401
b:54.5
occ:1.00
|
N
|
C:TRP217
|
3.2
|
61.5
|
1.0
|
N
|
C:LEU215
|
3.3
|
47.3
|
1.0
|
CA
|
C:SER213
|
3.5
|
43.6
|
1.0
|
N
|
C:GLY218
|
3.5
|
68.9
|
1.0
|
CB
|
C:LEU215
|
3.6
|
51.8
|
1.0
|
CA
|
C:TRP217
|
3.6
|
67.7
|
1.0
|
C
|
C:SER213
|
3.6
|
43.2
|
1.0
|
CA
|
C:LEU215
|
3.7
|
50.9
|
1.0
|
C
|
C:LEU215
|
3.7
|
52.4
|
1.0
|
N
|
C:GLY216
|
3.7
|
53.3
|
1.0
|
O
|
C:SER213
|
3.9
|
43.9
|
1.0
|
CB
|
C:SER213
|
4.0
|
45.2
|
1.0
|
N
|
C:PRO214
|
4.0
|
43.5
|
1.0
|
C
|
C:TRP217
|
4.1
|
68.5
|
1.0
|
CD
|
C:PRO214
|
4.1
|
44.3
|
1.0
|
C
|
C:GLY216
|
4.2
|
58.5
|
1.0
|
OG
|
C:SER213
|
4.3
|
47.9
|
1.0
|
O
|
C:LEU215
|
4.3
|
52.9
|
1.0
|
CG
|
C:LEU215
|
4.4
|
52.0
|
1.0
|
CA
|
C:GLY216
|
4.5
|
55.0
|
1.0
|
C
|
C:PRO214
|
4.5
|
45.4
|
1.0
|
CA
|
C:GLY218
|
4.6
|
70.1
|
1.0
|
N
|
C:SER213
|
4.7
|
42.6
|
1.0
|
CA
|
C:PRO214
|
4.8
|
43.3
|
1.0
|
CG
|
C:PRO214
|
4.9
|
43.9
|
1.0
|
CB
|
C:TRP217
|
5.0
|
69.4
|
1.0
|
CD1
|
C:LEU215
|
5.0
|
54.5
|
1.0
|
|
Chlorine binding site 5 out
of 5 in 4xk2
Go back to
Chlorine Binding Sites List in 4xk2
Chlorine binding site 5 out
of 5 in the Crystal Structure of Aldo-Keto Reductase From Polaromonas Sp. JS666
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of Aldo-Keto Reductase From Polaromonas Sp. JS666 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl402
b:38.3
occ:1.00
|
O
|
C:HOH560
|
3.0
|
32.4
|
1.0
|
O
|
C:HOH579
|
3.0
|
35.6
|
1.0
|
NE2
|
C:GLN138
|
3.1
|
32.0
|
1.0
|
CG
|
C:PRO135
|
4.0
|
31.3
|
1.0
|
CD
|
C:GLN138
|
4.1
|
32.2
|
1.0
|
CB
|
C:GLN138
|
4.1
|
31.1
|
1.0
|
CG
|
C:GLN138
|
4.2
|
31.6
|
1.0
|
CD
|
C:PRO135
|
4.3
|
30.8
|
1.0
|
O
|
C:HOH588
|
4.8
|
43.3
|
1.0
|
CB
|
C:PRO135
|
4.9
|
31.1
|
1.0
|
|
Reference:
O.A.Gasiorowska,
K.B.Handing,
I.G.Shabalin,
P.Sroka,
W.Minor.
Crystal Structure of Aldo-Keto Reductase From Polaromonas Sp. JS666 To Be Published.
Page generated: Fri Jul 26 03:30:14 2024
|