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Chlorine in PDB 4xm5: C. Glabrata SLX1.

Protein crystallography data

The structure of C. Glabrata SLX1., PDB code: 4xm5 was solved by V.Gaur, H.D.M.Wyatt, W.Komorowska, R.H.Szczepanowski, D.De Sanctis, K.M.Gorecka, S.C.West, M.Nowotny, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.73 / 2.34
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 57.486, 57.486, 183.642, 90.00, 90.00, 90.00
R / Rfree (%) 19.1 / 25.1

Other elements in 4xm5:

The structure of C. Glabrata SLX1. also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the C. Glabrata SLX1. (pdb code 4xm5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the C. Glabrata SLX1., PDB code: 4xm5:

Chlorine binding site 1 out of 1 in 4xm5

Go back to Chlorine Binding Sites List in 4xm5
Chlorine binding site 1 out of 1 in the C. Glabrata SLX1.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of C. Glabrata SLX1. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:0.1
occ:1.00
NH1 A:ARG58 3.3 58.3 1.0
OD1 A:ASP55 3.3 62.0 1.0
N A:ASP55 3.5 61.8 1.0
N A:GLY56 3.6 49.8 1.0
NE A:ARG54 3.6 64.1 1.0
N A:ARG58 3.7 39.4 1.0
NH2 A:ARG54 3.8 59.8 1.0
CB A:ARG58 4.0 41.3 1.0
N A:THR57 4.0 44.2 1.0
CA A:ARG54 4.1 68.8 1.0
CZ A:ARG54 4.2 61.9 1.0
CD A:ARG58 4.2 49.5 1.0
C A:ARG54 4.2 66.4 1.0
CB A:ARG54 4.3 68.9 1.0
CZ A:ARG58 4.3 57.0 1.0
CA A:GLY56 4.3 47.6 1.0
CA A:ASP55 4.4 60.4 1.0
CG A:ASP55 4.4 61.6 1.0
CA A:ARG58 4.4 39.7 1.0
C A:ASP55 4.4 55.3 1.0
CG A:ARG58 4.4 43.9 1.0
CG A:ARG54 4.5 68.7 1.0
C A:GLY56 4.5 47.4 1.0
O A:ARG58 4.6 40.3 1.0
CB A:THR57 4.6 42.5 1.0
O A:HOH581 4.6 56.6 1.0
CD A:ARG54 4.6 67.2 1.0
CA A:THR57 4.7 39.4 1.0
NE A:ARG58 4.7 54.0 1.0
C A:THR57 4.7 38.2 1.0
CB A:ASP55 4.9 62.6 1.0
C A:ARG58 5.0 42.2 1.0

Reference:

V.Gaur, H.D.Wyatt, W.Komorowska, R.H.Szczepanowski, D.De Sanctis, K.M.Gorecka, S.C.West, M.Nowotny. Structural and Mechanistic Analysis of the SLX1-SLX4 Endonuclease. Cell Rep 2015.
ISSN: ESSN 2211-1247
PubMed: 25753413
DOI: 10.1016/J.CELREP.2015.02.019
Page generated: Sat Dec 12 11:20:52 2020

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