Chlorine in PDB 4y0b: The Structure of Arabidopsis CLPT1

Protein crystallography data

The structure of The Structure of Arabidopsis CLPT1, PDB code: 4y0b was solved by M.S.Kimber, L.Schultz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.46 / 2.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 30.400, 109.200, 120.500, 90.00, 90.00, 90.00
R / Rfree (%) 20.6 / 25.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Structure of Arabidopsis CLPT1 (pdb code 4y0b). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the The Structure of Arabidopsis CLPT1, PDB code: 4y0b:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4y0b

Go back to Chlorine Binding Sites List in 4y0b
Chlorine binding site 1 out of 2 in the The Structure of Arabidopsis CLPT1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Structure of Arabidopsis CLPT1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:58.5
occ:1.00
CB A:THR188 3.4 79.0 1.0
N A:THR189 3.6 56.9 1.0
OG A:SER87 3.6 53.7 1.0
OG1 A:THR189 3.7 64.2 1.0
CG2 A:THR188 3.8 77.1 1.0
CA A:THR188 3.9 71.3 1.0
CB A:ARG89 4.0 53.5 1.0
NH1 A:ARG89 4.0 77.7 1.0
CB A:SER124 4.2 64.0 1.0
C A:THR188 4.2 61.5 1.0
CB A:SER87 4.3 53.0 1.0
CG2 A:THR189 4.4 53.0 1.0
CB A:THR189 4.4 57.5 1.0
OG1 A:THR188 4.5 85.0 1.0
CA A:THR189 4.6 57.8 1.0
CD A:ARG89 4.6 69.7 1.0
CG A:ARG89 4.6 52.4 1.0
CA A:SER124 4.9 58.1 1.0

Chlorine binding site 2 out of 2 in 4y0b

Go back to Chlorine Binding Sites List in 4y0b
Chlorine binding site 2 out of 2 in the The Structure of Arabidopsis CLPT1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Structure of Arabidopsis CLPT1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl301

b:57.7
occ:1.00
O B:HOH411 2.5 53.1 1.0
OG1 B:THR189 3.4 61.8 1.0
OG B:SER87 3.4 68.0 1.0
N B:THR189 3.5 50.5 1.0
CB B:THR188 3.6 72.7 1.0
CB B:ARG89 3.8 55.4 1.0
CA B:THR188 3.9 67.9 1.0
CG2 B:THR189 4.0 55.2 1.0
CG2 B:THR188 4.0 73.2 1.0
CB B:SER87 4.1 67.2 1.0
CB B:THR189 4.2 53.2 1.0
C B:THR188 4.2 57.9 1.0
NE B:ARG89 4.2 77.5 1.0
CB B:SER124 4.3 64.7 1.0
CD B:ARG89 4.4 69.9 1.0
CG B:ARG89 4.4 64.5 1.0
CA B:THR189 4.5 50.0 1.0
OG1 B:THR188 4.7 71.0 1.0
N B:ALA90 4.9 46.6 1.0
CA B:ARG89 4.9 59.5 1.0

Reference:

J.Kim, M.S.Kimber, K.Nishimura, G.Friso, L.Schultz, L.Ponnala, K.J.Van Wijk. Structures, Functions, and Interactions of CLPT1 and CLPT2 in the Clp Protease System of Arabidopsis Chloroplasts. Plant Cell 2015.
ISSN: ESSN 1532-298X
PubMed: 25921872
DOI: 10.1105/TPC.15.00106
Page generated: Sat Dec 12 11:21:59 2020

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