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Chlorine in PDB 4y3r: Endothiapepsin in Complex with Fragment 306

Enzymatic activity of Endothiapepsin in Complex with Fragment 306

All present enzymatic activity of Endothiapepsin in Complex with Fragment 306:
3.4.23.22;

Protein crystallography data

The structure of Endothiapepsin in Complex with Fragment 306, PDB code: 4y3r was solved by X.Wang, A.Heine, G.Klebe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.02 / 1.13
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 45.218, 73.159, 52.735, 90.00, 109.61, 90.00
R / Rfree (%) 12.4 / 14.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Endothiapepsin in Complex with Fragment 306 (pdb code 4y3r). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Endothiapepsin in Complex with Fragment 306, PDB code: 4y3r:

Chlorine binding site 1 out of 1 in 4y3r

Go back to Chlorine Binding Sites List in 4y3r
Chlorine binding site 1 out of 1 in the Endothiapepsin in Complex with Fragment 306


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Endothiapepsin in Complex with Fragment 306 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:22.5
occ:0.86
CL2 A:F06403 0.0 22.5 0.9
C1 A:F06403 1.7 19.5 0.9
C3 A:F06403 2.7 18.8 0.9
C7 A:F06403 2.7 17.1 0.9
C8 A:F06403 3.1 15.9 0.9
HZ A:PHE194 3.2 18.3 1.0
HD11 A:ILE217 3.4 14.2 1.0
HD13 A:ILE217 3.4 14.2 1.0
CZ A:PHE194 3.4 15.3 1.0
HE2 A:PHE194 3.6 15.8 1.0
S9 A:F06403 3.6 13.9 0.9
CE2 A:PHE194 3.7 13.2 1.0
HG21 A:ILE302 3.7 22.7 1.0
CD1 A:ILE217 3.8 11.8 1.0
C4 A:F06403 4.0 18.9 0.9
C6 A:F06403 4.0 14.0 0.9
HD12 A:ILE217 4.1 14.2 1.0
CE1 A:PHE194 4.2 16.2 1.0
HD11 A:ILE304 4.4 14.2 1.0
HE1 A:PHE194 4.4 19.5 1.0
C5 A:F06403 4.5 17.5 0.9
CG2 A:ILE302 4.6 18.9 1.0
HD13 A:ILE302 4.6 25.2 1.0
CD2 A:PHE194 4.6 11.7 1.0
HD13 A:ILE304 4.7 14.2 1.0
HG22 A:ILE302 4.7 22.7 1.0
HG12 A:ILE304 4.8 11.6 1.0
HG23 A:ILE302 4.8 22.7 1.0
O A:GLY37 4.9 10.8 1.0
C10 A:F06403 4.9 11.1 0.9
CD1 A:ILE304 4.9 11.8 1.0
CD1 A:PHE194 5.0 14.6 1.0
O A:HOH560 5.0 22.1 1.0

Reference:

X.Wang, A.Heine, G.Klebe. Crystallographic Fragment Screening of An Entire Library To Be Published.
Page generated: Fri Jul 11 23:10:26 2025

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