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Chlorine in PDB 4yok: Crystal Structure of A DUF3823 Family Protein (PARMER_04126) From Parabacteroides Merdae Atcc 43184 at 1.80 A Resolution

Protein crystallography data

The structure of Crystal Structure of A DUF3823 Family Protein (PARMER_04126) From Parabacteroides Merdae Atcc 43184 at 1.80 A Resolution, PDB code: 4yok was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.53 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 41.866, 66.212, 68.593, 90.00, 90.00, 90.00
R / Rfree (%) 17.3 / 21.4

Other elements in 4yok:

The structure of Crystal Structure of A DUF3823 Family Protein (PARMER_04126) From Parabacteroides Merdae Atcc 43184 at 1.80 A Resolution also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A DUF3823 Family Protein (PARMER_04126) From Parabacteroides Merdae Atcc 43184 at 1.80 A Resolution (pdb code 4yok). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of A DUF3823 Family Protein (PARMER_04126) From Parabacteroides Merdae Atcc 43184 at 1.80 A Resolution, PDB code: 4yok:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4yok

Go back to Chlorine Binding Sites List in 4yok
Chlorine binding site 1 out of 2 in the Crystal Structure of A DUF3823 Family Protein (PARMER_04126) From Parabacteroides Merdae Atcc 43184 at 1.80 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A DUF3823 Family Protein (PARMER_04126) From Parabacteroides Merdae Atcc 43184 at 1.80 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:31.4
occ:1.00
N A:GLY135 3.0 32.4 1.0
CA A:GLY135 3.5 32.9 1.0
CB A:THR134 3.9 33.4 1.0
N A:SER136 4.1 28.8 1.0
C A:THR134 4.2 34.1 1.0
OG1 A:THR134 4.2 28.1 1.0
C A:GLY135 4.2 36.3 1.0
CA A:THR134 4.4 28.7 1.0
CB A:SER136 4.9 31.8 1.0

Chlorine binding site 2 out of 2 in 4yok

Go back to Chlorine Binding Sites List in 4yok
Chlorine binding site 2 out of 2 in the Crystal Structure of A DUF3823 Family Protein (PARMER_04126) From Parabacteroides Merdae Atcc 43184 at 1.80 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A DUF3823 Family Protein (PARMER_04126) From Parabacteroides Merdae Atcc 43184 at 1.80 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:50.8
occ:1.00
O A:HOH537 3.0 41.7 1.0
N A:ARG174 3.2 14.8 1.0
O A:ARG174 3.6 18.1 1.0
CA A:TYR173 3.6 18.4 1.0
O A:HOH417 3.8 40.9 1.0
C A:TYR173 3.9 18.0 1.0
CD1 A:TYR173 4.2 20.0 1.0
CA A:ARG174 4.2 14.1 1.0
O A:LEU172 4.3 26.4 1.0
C A:ARG174 4.3 19.5 1.0
CB A:ARG174 4.5 14.3 1.0
CG A:TYR173 4.5 18.2 1.0
N A:TYR173 4.5 19.2 1.0
CB A:TYR173 4.5 19.6 1.0
C A:LEU172 4.8 25.6 1.0
CE1 A:TYR173 4.8 20.5 1.0
OD1 A:ASN171 4.9 18.9 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Fri Jul 26 04:12:27 2024

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