Chlorine in PDB 4z1m: Bovine F1-Atpase Inhibited By Three Copies of the Inhibitor Protein IF1 Crystallised in the Presence of Thiophosphate.
Enzymatic activity of Bovine F1-Atpase Inhibited By Three Copies of the Inhibitor Protein IF1 Crystallised in the Presence of Thiophosphate.
All present enzymatic activity of Bovine F1-Atpase Inhibited By Three Copies of the Inhibitor Protein IF1 Crystallised in the Presence of Thiophosphate.:
3.6.3.14;
Protein crystallography data
The structure of Bovine F1-Atpase Inhibited By Three Copies of the Inhibitor Protein IF1 Crystallised in the Presence of Thiophosphate., PDB code: 4z1m
was solved by
J.V.Bason,
M.G.Montgomery,
A.G.W.Leslie,
J.E.Walker,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
46.31 /
3.30
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
108.773,
155.286,
271.018,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
23.9 /
27.5
|
Other elements in 4z1m:
The structure of Bovine F1-Atpase Inhibited By Three Copies of the Inhibitor Protein IF1 Crystallised in the Presence of Thiophosphate. also contains other interesting chemical elements:
Chlorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
11;
Binding sites:
The binding sites of Chlorine atom in the Bovine F1-Atpase Inhibited By Three Copies of the Inhibitor Protein IF1 Crystallised in the Presence of Thiophosphate.
(pdb code 4z1m). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 11 binding sites of Chlorine where determined in the
Bovine F1-Atpase Inhibited By Three Copies of the Inhibitor Protein IF1 Crystallised in the Presence of Thiophosphate., PDB code: 4z1m:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Chlorine binding site 1 out
of 11 in 4z1m
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Chlorine Binding Sites List in 4z1m
Chlorine binding site 1 out
of 11 in the Bovine F1-Atpase Inhibited By Three Copies of the Inhibitor Protein IF1 Crystallised in the Presence of Thiophosphate.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Bovine F1-Atpase Inhibited By Three Copies of the Inhibitor Protein IF1 Crystallised in the Presence of Thiophosphate. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl603
b:52.3
occ:1.00
|
N
|
B:ALA114
|
3.3
|
43.7
|
1.0
|
CB
|
B:ALA114
|
3.7
|
44.4
|
1.0
|
CA
|
B:PRO120
|
4.0
|
63.4
|
1.0
|
CA
|
B:ALA114
|
4.1
|
44.4
|
1.0
|
CA
|
B:ASN113
|
4.1
|
43.6
|
1.0
|
O
|
B:GLY119
|
4.2
|
63.9
|
1.0
|
C
|
B:ASN113
|
4.2
|
43.4
|
1.0
|
N
|
B:ILE121
|
4.4
|
62.8
|
1.0
|
CB
|
B:ASN113
|
4.5
|
44.5
|
1.0
|
CG1
|
B:ILE121
|
4.6
|
62.3
|
1.0
|
C
|
B:PRO120
|
4.7
|
63.0
|
1.0
|
CB
|
B:PRO120
|
4.7
|
63.1
|
1.0
|
O
|
B:ALA114
|
4.7
|
45.5
|
1.0
|
N
|
B:PRO120
|
4.8
|
63.7
|
1.0
|
C
|
B:GLY119
|
4.8
|
64.0
|
1.0
|
OD1
|
B:ASN113
|
5.0
|
45.7
|
1.0
|
C
|
B:ALA114
|
5.0
|
45.0
|
1.0
|
|
Chlorine binding site 2 out
of 11 in 4z1m
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Chlorine Binding Sites List in 4z1m
Chlorine binding site 2 out
of 11 in the Bovine F1-Atpase Inhibited By Three Copies of the Inhibitor Protein IF1 Crystallised in the Presence of Thiophosphate.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Bovine F1-Atpase Inhibited By Three Copies of the Inhibitor Protein IF1 Crystallised in the Presence of Thiophosphate. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl603
b:85.5
occ:1.00
|
OG
|
C:SER123
|
2.9
|
0.1
|
1.0
|
O
|
C:SER123
|
3.5
|
0.1
|
1.0
|
NH1
|
C:ARG126
|
3.5
|
84.1
|
1.0
|
CG
|
C:ARG126
|
3.6
|
84.7
|
1.0
|
CD
|
C:ARG126
|
3.6
|
84.6
|
1.0
|
CB
|
C:SER123
|
4.2
|
0.5
|
1.0
|
C
|
C:SER123
|
4.2
|
0.5
|
1.0
|
O
|
C:ALA125
|
4.4
|
96.0
|
1.0
|
CZ
|
C:ARG126
|
4.4
|
84.3
|
1.0
|
N
|
C:SER123
|
4.4
|
0.2
|
1.0
|
NE
|
C:ARG126
|
4.5
|
84.4
|
1.0
|
CA
|
C:SER123
|
4.5
|
0.2
|
1.0
|
CB
|
C:PRO98
|
4.7
|
80.5
|
1.0
|
O
|
C:LYS124
|
4.8
|
0.1
|
1.0
|
|
Chlorine binding site 3 out
of 11 in 4z1m
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Chlorine Binding Sites List in 4z1m
Chlorine binding site 3 out
of 11 in the Bovine F1-Atpase Inhibited By Three Copies of the Inhibitor Protein IF1 Crystallised in the Presence of Thiophosphate.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Bovine F1-Atpase Inhibited By Three Copies of the Inhibitor Protein IF1 Crystallised in the Presence of Thiophosphate. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl604
b:52.8
occ:1.00
|
NE
|
C:ARG304
|
3.2
|
64.8
|
1.0
|
NH2
|
C:ARG304
|
3.4
|
63.7
|
1.0
|
CE1
|
C:TYR248
|
3.5
|
60.9
|
1.0
|
CD1
|
C:TYR248
|
3.6
|
61.3
|
1.0
|
CZ
|
C:ARG304
|
3.7
|
64.0
|
1.0
|
CZ
|
C:TYR248
|
3.9
|
60.5
|
1.0
|
CA
|
C:GLY130
|
3.9
|
81.6
|
1.0
|
CG
|
C:TYR248
|
4.0
|
61.2
|
1.0
|
CE2
|
C:TYR248
|
4.2
|
60.4
|
1.0
|
OH
|
C:TYR244
|
4.2
|
65.0
|
1.0
|
CD2
|
C:TYR248
|
4.3
|
60.7
|
1.0
|
CD
|
C:ARG304
|
4.3
|
65.0
|
1.0
|
OH
|
C:TYR248
|
4.5
|
60.2
|
1.0
|
N
|
C:GLY130
|
4.7
|
82.0
|
1.0
|
CB
|
C:TYR248
|
4.8
|
61.5
|
1.0
|
C
|
C:GLY130
|
5.0
|
80.8
|
1.0
|
|
Chlorine binding site 4 out
of 11 in 4z1m
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Chlorine Binding Sites List in 4z1m
Chlorine binding site 4 out
of 11 in the Bovine F1-Atpase Inhibited By Three Copies of the Inhibitor Protein IF1 Crystallised in the Presence of Thiophosphate.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Bovine F1-Atpase Inhibited By Three Copies of the Inhibitor Protein IF1 Crystallised in the Presence of Thiophosphate. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl501
b:44.9
occ:1.00
|
OD2
|
E:ASP330
|
3.7
|
54.0
|
1.0
|
NE2
|
B:GLN215
|
3.9
|
59.5
|
1.0
|
OG
|
B:SER211
|
4.0
|
51.6
|
1.0
|
O
|
E:GLY149
|
4.3
|
63.3
|
1.0
|
O
|
E:LYS148
|
4.3
|
67.7
|
1.0
|
CB
|
B:SER211
|
4.4
|
51.1
|
1.0
|
NZ
|
B:LYS209
|
4.5
|
57.7
|
1.0
|
CG
|
E:ASP330
|
4.5
|
53.6
|
1.0
|
C
|
E:GLY149
|
4.6
|
62.9
|
1.0
|
CA
|
E:GLY150
|
4.7
|
59.5
|
1.0
|
N
|
E:GLY150
|
4.7
|
61.2
|
1.0
|
OD1
|
E:ASP330
|
4.8
|
53.1
|
1.0
|
NE2
|
E:GLN130
|
5.0
|
81.3
|
1.0
|
CB
|
E:ALA147
|
5.0
|
66.3
|
1.0
|
|
Chlorine binding site 5 out
of 11 in 4z1m
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Chlorine Binding Sites List in 4z1m
Chlorine binding site 5 out
of 11 in the Bovine F1-Atpase Inhibited By Three Copies of the Inhibitor Protein IF1 Crystallised in the Presence of Thiophosphate.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Bovine F1-Atpase Inhibited By Three Copies of the Inhibitor Protein IF1 Crystallised in the Presence of Thiophosphate. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl502
b:52.2
occ:1.00
|
OD1
|
E:ASN223
|
3.4
|
51.3
|
1.0
|
N
|
E:GLN221
|
3.7
|
49.1
|
1.0
|
CG
|
E:GLU224
|
3.9
|
50.2
|
1.0
|
CD
|
E:GLU224
|
3.9
|
51.7
|
1.0
|
ND2
|
E:ASN223
|
3.9
|
51.9
|
1.0
|
CG
|
E:ASN223
|
4.0
|
51.3
|
1.0
|
CB
|
E:GLN221
|
4.1
|
47.6
|
1.0
|
OE1
|
E:GLU224
|
4.1
|
51.9
|
1.0
|
CG
|
E:GLN221
|
4.2
|
47.1
|
1.0
|
OE2
|
E:GLU224
|
4.3
|
53.4
|
1.0
|
OG1
|
E:THR190
|
4.4
|
49.2
|
1.0
|
CA
|
E:GLY220
|
4.5
|
47.0
|
1.0
|
CA
|
E:GLN221
|
4.5
|
48.8
|
1.0
|
O
|
E:TYR219
|
4.5
|
46.9
|
1.0
|
C
|
E:GLY220
|
4.6
|
48.2
|
1.0
|
C
|
E:TYR219
|
4.8
|
46.3
|
1.0
|
N
|
E:GLY220
|
4.9
|
46.3
|
1.0
|
CD1
|
E:ILE102
|
4.9
|
51.2
|
1.0
|
|
Chlorine binding site 6 out
of 11 in 4z1m
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Chlorine Binding Sites List in 4z1m
Chlorine binding site 6 out
of 11 in the Bovine F1-Atpase Inhibited By Three Copies of the Inhibitor Protein IF1 Crystallised in the Presence of Thiophosphate.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Bovine F1-Atpase Inhibited By Three Copies of the Inhibitor Protein IF1 Crystallised in the Presence of Thiophosphate. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl503
b:54.9
occ:1.00
|
NH2
|
E:ARG244
|
3.1
|
43.1
|
1.0
|
OE2
|
E:GLU241
|
3.3
|
48.6
|
1.0
|
OD2
|
E:ASP245
|
3.5
|
47.6
|
1.0
|
CD
|
E:GLU241
|
4.0
|
47.5
|
1.0
|
CZ
|
E:ARG244
|
4.4
|
43.4
|
1.0
|
CG
|
E:PRO121
|
4.4
|
58.6
|
1.0
|
O
|
E:GLU119
|
4.4
|
60.0
|
1.0
|
CG
|
E:ASP245
|
4.4
|
48.6
|
1.0
|
CG
|
E:GLU241
|
4.6
|
46.6
|
1.0
|
CD
|
E:PRO121
|
4.6
|
59.2
|
1.0
|
OD1
|
E:ASP245
|
4.6
|
48.1
|
1.0
|
OE1
|
E:GLU241
|
4.7
|
47.0
|
1.0
|
N
|
E:PRO121
|
5.0
|
59.7
|
1.0
|
|
Chlorine binding site 7 out
of 11 in 4z1m
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Chlorine Binding Sites List in 4z1m
Chlorine binding site 7 out
of 11 in the Bovine F1-Atpase Inhibited By Three Copies of the Inhibitor Protein IF1 Crystallised in the Presence of Thiophosphate.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Bovine F1-Atpase Inhibited By Three Copies of the Inhibitor Protein IF1 Crystallised in the Presence of Thiophosphate. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl504
b:69.8
occ:1.00
|
OH
|
E:TYR242
|
3.3
|
49.9
|
1.0
|
NE2
|
E:GLN112
|
3.5
|
63.4
|
1.0
|
NE2
|
E:GLN246
|
3.7
|
60.9
|
1.0
|
CB
|
E:GLN246
|
4.1
|
57.8
|
1.0
|
CZ
|
E:TYR242
|
4.2
|
50.0
|
1.0
|
CG
|
E:GLN246
|
4.5
|
59.4
|
1.0
|
CD
|
E:GLN246
|
4.6
|
60.5
|
1.0
|
CD
|
E:GLN112
|
4.7
|
63.5
|
1.0
|
CE2
|
E:TYR242
|
4.8
|
50.5
|
1.0
|
|
Chlorine binding site 8 out
of 11 in 4z1m
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Chlorine Binding Sites List in 4z1m
Chlorine binding site 8 out
of 11 in the Bovine F1-Atpase Inhibited By Three Copies of the Inhibitor Protein IF1 Crystallised in the Presence of Thiophosphate.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Bovine F1-Atpase Inhibited By Three Copies of the Inhibitor Protein IF1 Crystallised in the Presence of Thiophosphate. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Cl503
b:60.0
occ:1.00
|
OD2
|
F:ASP288
|
3.2
|
61.7
|
1.0
|
NH1
|
F:ARG274
|
3.9
|
53.4
|
1.0
|
NH2
|
F:ARG274
|
4.0
|
54.6
|
1.0
|
CG2
|
F:VAL268
|
4.2
|
60.4
|
1.0
|
CZ
|
F:ARG274
|
4.3
|
53.3
|
1.0
|
CD1
|
F:LEU272
|
4.4
|
62.5
|
1.0
|
CG
|
F:ASP288
|
4.4
|
62.0
|
1.0
|
NH2
|
F:ARG231
|
4.6
|
63.7
|
1.0
|
CA
|
F:GLY265
|
4.7
|
62.2
|
1.0
|
OG1
|
F:THR284
|
4.7
|
53.8
|
1.0
|
O
|
F:GLY265
|
4.9
|
62.3
|
1.0
|
|
Chlorine binding site 9 out
of 11 in 4z1m
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Chlorine Binding Sites List in 4z1m
Chlorine binding site 9 out
of 11 in the Bovine F1-Atpase Inhibited By Three Copies of the Inhibitor Protein IF1 Crystallised in the Presence of Thiophosphate.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of Bovine F1-Atpase Inhibited By Three Copies of the Inhibitor Protein IF1 Crystallised in the Presence of Thiophosphate. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Cl504
b:51.5
occ:1.00
|
OD1
|
F:ASN223
|
3.1
|
60.0
|
1.0
|
OE2
|
F:GLU224
|
3.2
|
65.2
|
1.0
|
ND2
|
F:ASN223
|
3.7
|
60.3
|
1.0
|
CG
|
F:ASN223
|
3.8
|
59.8
|
1.0
|
CB
|
F:GLN221
|
3.8
|
58.3
|
1.0
|
OG1
|
F:THR190
|
3.8
|
58.4
|
1.0
|
N
|
F:GLN221
|
3.9
|
59.5
|
1.0
|
CG
|
F:GLN221
|
4.1
|
58.0
|
1.0
|
CD
|
F:GLU224
|
4.1
|
64.5
|
1.0
|
CG
|
F:GLU224
|
4.1
|
63.0
|
1.0
|
CG2
|
F:THR190
|
4.2
|
57.6
|
1.0
|
CA
|
F:GLN221
|
4.4
|
59.1
|
1.0
|
CB
|
F:THR190
|
4.7
|
57.5
|
1.0
|
O
|
F:TYR219
|
4.9
|
61.9
|
1.0
|
C
|
F:GLY220
|
4.9
|
60.0
|
1.0
|
CA
|
B:GLY135
|
4.9
|
53.5
|
1.0
|
CA
|
F:GLY220
|
4.9
|
60.1
|
1.0
|
|
Chlorine binding site 10 out
of 11 in 4z1m
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Chlorine Binding Sites List in 4z1m
Chlorine binding site 10 out
of 11 in the Bovine F1-Atpase Inhibited By Three Copies of the Inhibitor Protein IF1 Crystallised in the Presence of Thiophosphate.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 10 of Bovine F1-Atpase Inhibited By Three Copies of the Inhibitor Protein IF1 Crystallised in the Presence of Thiophosphate. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Cl301
b:70.6
occ:1.00
|
NZ
|
G:LYS260
|
3.5
|
62.9
|
1.0
|
CG
|
G:LYS260
|
3.6
|
62.2
|
1.0
|
O
|
G:LYS260
|
3.7
|
61.2
|
1.0
|
N
|
F:VAL279
|
3.8
|
55.4
|
1.0
|
CG
|
G:GLU264
|
3.9
|
67.0
|
1.0
|
CE
|
G:LYS260
|
4.2
|
62.9
|
1.0
|
CA
|
F:ALA278
|
4.3
|
54.7
|
1.0
|
CG2
|
G:ILE263
|
4.4
|
59.7
|
1.0
|
CD
|
G:LYS260
|
4.5
|
62.8
|
1.0
|
C
|
G:LYS260
|
4.5
|
61.3
|
1.0
|
N
|
G:GLU264
|
4.6
|
62.7
|
1.0
|
C
|
F:ALA278
|
4.6
|
55.3
|
1.0
|
CB
|
G:ILE263
|
4.6
|
59.6
|
1.0
|
CA
|
F:VAL279
|
4.7
|
55.2
|
1.0
|
CA
|
G:LYS260
|
4.7
|
61.1
|
1.0
|
OE2
|
G:GLU264
|
4.7
|
69.6
|
1.0
|
CB
|
G:LYS260
|
4.7
|
61.5
|
1.0
|
O
|
F:SER277
|
4.8
|
54.0
|
1.0
|
CD
|
G:GLU264
|
4.8
|
68.5
|
1.0
|
CA
|
G:GLU264
|
4.9
|
64.2
|
1.0
|
CB
|
F:ALA278
|
5.0
|
54.7
|
1.0
|
C
|
G:ILE263
|
5.0
|
62.0
|
1.0
|
CB
|
G:GLU264
|
5.0
|
64.8
|
1.0
|
|
Reference:
J.V.Bason,
M.G.Montgomery,
A.G.Leslie,
J.E.Walker.
How Release of Phosphate From Mammalian F1-Atpase Generates A Rotary Substep. Proc.Natl.Acad.Sci.Usa V. 112 6009 2015.
ISSN: ESSN 1091-6490
PubMed: 25918412
DOI: 10.1073/PNAS.1506465112
Page generated: Fri Jul 26 04:20:11 2024
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