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Chlorine in PDB 4zf4: Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(CL1Y), H148D; Circular Permutant (50-51)

Protein crystallography data

The structure of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(CL1Y), H148D; Circular Permutant (50-51), PDB code: 4zf4 was solved by L.M.Oltrogge, S.G.Boxer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.34 / 1.82
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 51.840, 68.590, 60.880, 90.00, 100.50, 90.00
R / Rfree (%) 19.8 / 24.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(CL1Y), H148D; Circular Permutant (50-51) (pdb code 4zf4). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(CL1Y), H148D; Circular Permutant (50-51), PDB code: 4zf4:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4zf4

Go back to Chlorine Binding Sites List in 4zf4
Chlorine binding site 1 out of 2 in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(CL1Y), H148D; Circular Permutant (50-51)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(CL1Y), H148D; Circular Permutant (50-51) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl15

b:27.7
occ:1.00
CL1 A:4NT15 0.0 27.7 1.0
CE1 A:4NT15 1.8 19.5 1.0
OG1 A:THR155 2.7 18.4 1.0
CD1 A:4NT15 2.7 19.5 1.0
CZ A:4NT15 2.8 20.1 1.0
OH A:4NT15 3.0 23.7 1.0
CD A:GLU172 3.4 22.6 1.0
O A:HOH319 3.5 14.6 1.0
OE2 A:GLU172 3.5 24.8 1.0
OE1 A:GLU172 3.6 19.8 1.0
CE2 A:PHE95 3.6 18.4 1.0
CB A:THR153 3.8 14.8 1.0
OG1 A:THR153 3.9 20.3 1.0
CG A:GLU172 3.9 19.3 1.0
CB A:THR155 4.0 15.2 1.0
CD2 A:PHE95 4.0 19.2 1.0
CE2 A:4NT15 4.1 17.7 1.0
CG1 A:VAL11 4.1 17.1 1.0
CG2 A:4NT15 4.1 18.8 1.0
CG2 A:THR153 4.3 18.5 1.0
CG2 A:THR155 4.4 17.7 1.0
CZ A:PHE95 4.6 17.8 1.0
CD2 A:4NT15 4.6 19.5 1.0
OG1 A:4NT15 4.9 16.8 1.0

Chlorine binding site 2 out of 2 in 4zf4

Go back to Chlorine Binding Sites List in 4zf4
Chlorine binding site 2 out of 2 in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(CL1Y), H148D; Circular Permutant (50-51)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(CL1Y), H148D; Circular Permutant (50-51) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl15

b:30.5
occ:1.00
CL1 B:4NT15 0.0 30.5 1.0
CE1 B:4NT15 1.7 22.9 1.0
CZ B:4NT15 2.7 19.9 1.0
CD1 B:4NT15 2.8 20.5 1.0
OG1 B:THR155 2.9 20.4 1.0
OH B:4NT15 2.9 22.2 1.0
O B:HOH312 3.5 19.7 1.0
CD B:GLU172 3.5 22.5 1.0
CE2 B:PHE95 3.6 20.6 1.0
OE2 B:GLU172 3.7 24.7 1.0
OE1 B:GLU172 3.7 20.3 1.0
OG1 B:THR153 3.8 22.1 1.0
CD2 B:PHE95 3.9 19.8 1.0
CB B:THR153 3.9 18.1 1.0
CG B:GLU172 4.0 21.5 1.0
CE2 B:4NT15 4.1 21.4 1.0
CB B:THR155 4.1 18.0 1.0
CG2 B:4NT15 4.2 20.8 1.0
CG1 B:VAL11 4.2 17.6 1.0
CG2 B:THR153 4.4 19.9 1.0
CZ B:PHE95 4.5 21.0 1.0
CG2 B:THR155 4.6 17.1 1.0
CD2 B:4NT15 4.6 21.6 1.0
OG1 B:4NT15 4.9 19.9 1.0
CG B:PHE95 5.0 21.6 1.0

Reference:

L.M.Oltrogge, S.G.Boxer. Short Hydrogen Bonds and Proton Delocalization in Green Fluorescent Protein (Gfp). Acs Cent.Sci. V. 1 148 2015.
ISSN: ESSN 2374-7951
PubMed: 27162964
DOI: 10.1021/ACSCENTSCI.5B00160
Page generated: Fri Jul 26 04:33:50 2024

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