Chlorine in PDB 4zf5: Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(CL2Y), H148D; Circular Permutant ( 50-51)

The structure of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(CL2Y), H148D; Circular Permutant ( 50-51), PDB code: 4zf5 was solved by L.M.Oltrogge, S.G.Boxer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	56.66 / 1.70
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	46.140, 68.130, 58.000, 90.00, 102.33, 90.00
R / Rfree (%)	19.8 / 23.2

The binding sites of Chlorine atom in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(CL2Y), H148D; Circular Permutant ( 50-51) (pdb code 4zf5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(CL2Y), H148D; Circular Permutant ( 50-51), PDB code: 4zf5:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(CL2Y), H148D; Circular Permutant ( 50-51)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(CL2Y), H148D; Circular Permutant ( 50-51) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl15 b:35.7 occ:1.00 CL1 A:4NU15 0.0 35.7 1.0 CE1 A:4NU15 1.7 21.1 1.0 OG1 A:THR155 2.5 26.1 1.0 CZ A:4NU15 2.7 22.7 1.0 CD1 A:4NU15 2.7 19.8 1.0 O4 A:4NU15 2.9 22.7 1.0 OE1 A:GLU172 3.5 28.7 1.0 O A:HOH316 3.5 23.7 1.0 CG1 A:VAL11 3.5 18.4 1.0 CD A:GLU172 3.6 27.4 1.0 CB A:THR155 3.7 20.8 1.0 OE2 A:GLU172 4.0 30.4 1.0 CG2 A:THR155 4.0 23.2 1.0 CE2 A:4NU15 4.1 16.9 1.0 CG2 A:4NU15 4.1 14.4 1.0 CG A:GLU172 4.1 25.1 1.0 CZ A:PHE95 4.2 31.1 1.0 CE2 A:PHE95 4.2 28.3 1.0 CD2 A:4NU15 4.6 16.4 1.0 OG1 A:4NU15 4.7 17.1 1.0 OG1 A:THR153 4.8 27.9 1.0 CB A:THR153 4.8 21.9 1.0 CB A:VAL11 4.9 13.7 1.0 CA A:THR155 5.0 14.9 1.0

Chlorine binding site 2 out of 4 in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(CL2Y), H148D; Circular Permutant ( 50-51)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(CL2Y), H148D; Circular Permutant ( 50-51) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl15 b:33.4 occ:1.00 CL2 A:4NU15 0.0 33.4 1.0 CE2 A:4NU15 1.7 16.9 1.0 CD2 A:4NU15 2.7 16.4 1.0 CZ A:4NU15 2.8 22.7 1.0 O4 A:4NU15 3.1 22.7 1.0 CB A:SER97 3.4 26.4 1.0 CD2 A:PHE115 3.4 17.7 1.0 CG2 A:VAL100 3.5 17.2 1.0 OG A:SER97 3.5 27.9 1.0 CE2 A:PHE115 3.5 16.2 1.0 O A:ASP98 3.6 28.6 1.0 OG1 A:THR153 3.6 27.9 1.0 CG2 A:4NU15 4.1 14.4 1.0 CE1 A:4NU15 4.1 21.1 1.0 CG A:PHE115 4.2 16.3 1.0 CG2 A:THR153 4.3 20.8 1.0 CZ A:PHE115 4.3 15.2 1.0 CB A:THR153 4.5 21.9 1.0 CD1 A:4NU15 4.6 19.8 1.0 CG2 A:VAL117 4.6 18.1 1.0 C A:ASP98 4.8 26.9 1.0 CA A:SER97 4.8 23.2 1.0 CB A:PHE115 4.8 14.9 1.0 CD1 A:PHE115 4.8 15.4 1.0 CG2 A:THR12 4.8 11.9 1.0 CE1 A:PHE115 4.9 13.3 1.0 CB A:VAL100 4.9 14.3 1.0 O A:HOH333 4.9 24.2 1.0 N A:VAL100 4.9 14.4 1.0

Chlorine binding site 3 out of 4 in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(CL2Y), H148D; Circular Permutant ( 50-51)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(CL2Y), H148D; Circular Permutant ( 50-51) within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl15 b:33.1 occ:1.00 CL1 B:4NU15 0.0 33.1 1.0 CE1 B:4NU15 1.7 27.0 1.0 CZ B:4NU15 2.7 29.8 1.0 CD1 B:4NU15 2.7 26.8 1.0 OG1 B:THR155 2.8 24.3 1.0 O4 B:4NU15 2.9 32.2 1.0 CD B:GLU172 3.4 29.4 1.0 OE1 B:GLU172 3.5 28.9 1.0 OE2 B:GLU172 3.6 32.6 1.0 CE2 B:PHE95 3.7 28.0 1.0 O B:HOH308 3.7 29.6 1.0 OG1 B:THR153 3.8 28.9 1.0 CG B:GLU172 3.9 26.8 1.0 CB B:THR153 3.9 24.2 1.0 CD2 B:PHE95 4.0 25.7 1.0 CE2 B:4NU15 4.1 29.5 1.0 CG2 B:4NU15 4.1 25.9 1.0 CB B:THR155 4.1 24.8 1.0 CG1 B:VAL11 4.4 17.9 1.0 CG2 B:THR153 4.4 26.2 1.0 CG2 B:THR155 4.6 26.5 1.0 CD2 B:4NU15 4.6 25.9 1.0 CZ B:PHE95 4.6 26.2 1.0 OG1 B:4NU15 4.8 23.0 1.0 CB B:GLU172 5.0 23.2 1.0

Chlorine binding site 4 out of 4 in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(CL2Y), H148D; Circular Permutant ( 50-51)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(CL2Y), H148D; Circular Permutant ( 50-51) within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl15 b:41.9 occ:1.00 CL2 B:4NU15 0.0 41.9 1.0 CE2 B:4NU15 1.7 29.5 1.0 CZ B:4NU15 2.7 29.8 1.0 CD2 B:4NU15 2.7 25.9 1.0 O4 B:4NU15 3.0 32.2 1.0 CB B:ASP98 3.2 41.2 1.0 CE2 B:PHE115 3.3 33.1 1.0 CG2 B:VAL100 3.3 32.5 1.0 OD2 B:ASP98 3.3 39.5 1.0 CD2 B:PHE115 3.4 32.8 1.0 CG B:ASP98 3.6 40.7 1.0 CE1 B:4NU15 4.1 27.0 1.0 CZ B:PHE115 4.1 32.4 1.0 CG2 B:4NU15 4.1 25.9 1.0 CG2 B:VAL117 4.1 32.0 1.0 CG B:PHE115 4.2 36.8 1.0 CG2 B:THR12 4.6 19.9 1.0 CD1 B:4NU15 4.6 26.8 1.0 CA B:ASP98 4.6 37.8 1.0 CG2 B:THR153 4.7 26.2 1.0 OD1 B:ASP98 4.7 45.8 1.0 CB B:VAL100 4.8 32.9 1.0 N B:ASN99 4.8 34.3 1.0 OG1 B:THR153 4.8 28.9 1.0 CE1 B:PHE115 4.8 35.2 1.0 C B:ASP98 4.8 38.2 1.0 CD1 B:PHE115 4.9 34.9 1.0 C B:ASN99 4.9 35.2 1.0 N B:VAL100 4.9 34.5 1.0 O B:ASN99 4.9 42.1 1.0 CB B:PHE115 5.0 36.2 1.0

L.M.Oltrogge, S.G.Boxer. Short Hydrogen Bonds and Proton Delocalization in Green Fluorescent Protein (Gfp). Acs Cent.Sci. V. 1 148 2015.
ISSN: ESSN 2374-7951
PubMed: 27162964
DOI: 10.1021/ACSCENTSCI.5B00160