Chlorine in PDB 4zfz: Crystal Structure of Rhesus Macaque Mhc Class I Molecule Mamu-B*098 Complexed with Myristoylated 5-Mer Lipopeptide Derived From Siv Nef Protein

The structure of Crystal Structure of Rhesus Macaque Mhc Class I Molecule Mamu-B*098 Complexed with Myristoylated 5-Mer Lipopeptide Derived From Siv Nef Protein, PDB code: 4zfz was solved by D.Morita, M.Sugita, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.18 / 1.76
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	46.402, 85.179, 127.990, 89.20, 79.57, 90.02
R / Rfree (%)	19.5 / 22.8

The structure of Crystal Structure of Rhesus Macaque Mhc Class I Molecule Mamu-B*098 Complexed with Myristoylated 5-Mer Lipopeptide Derived From Siv Nef Protein also contains other interesting chemical elements:

Zinc

(Zn)

18 atoms

The binding sites of Chlorine atom in the Crystal Structure of Rhesus Macaque Mhc Class I Molecule Mamu-B*098 Complexed with Myristoylated 5-Mer Lipopeptide Derived From Siv Nef Protein (pdb code 4zfz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Rhesus Macaque Mhc Class I Molecule Mamu-B*098 Complexed with Myristoylated 5-Mer Lipopeptide Derived From Siv Nef Protein, PDB code: 4zfz:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Crystal Structure of Rhesus Macaque Mhc Class I Molecule Mamu-B*098 Complexed with Myristoylated 5-Mer Lipopeptide Derived From Siv Nef Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Rhesus Macaque Mhc Class I Molecule Mamu-B*098 Complexed with Myristoylated 5-Mer Lipopeptide Derived From Siv Nef Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl315 b:63.6 occ:1.00 NH1 A:ARG75 3.6 50.5 1.0 O A:HOH449 3.7 40.0 1.0 NH2 A:ARG75 3.8 39.6 1.0 CZ A:PHE36 3.8 29.5 1.0 CB A:SER38 3.9 30.7 1.0 CB A:ALA71 4.0 27.8 1.0 CZ A:ARG75 4.2 45.2 1.0 CE1 A:PHE36 4.2 25.6 1.0 CG A:LYS68 4.4 26.9 1.0 CA A:SER38 4.6 27.1 1.0 CA A:LYS68 4.8 27.6 1.0 O A:HOH540 4.9 43.4 1.0 CB A:LYS68 5.0 25.7 1.0

Chlorine binding site 2 out of 3 in the Crystal Structure of Rhesus Macaque Mhc Class I Molecule Mamu-B*098 Complexed with Myristoylated 5-Mer Lipopeptide Derived From Siv Nef Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Rhesus Macaque Mhc Class I Molecule Mamu-B*098 Complexed with Myristoylated 5-Mer Lipopeptide Derived From Siv Nef Protein within 5.0Å range: probe atom residue distance (Å) B Occ G:Cl314 b:61.7 occ:1.00 NH2 G:ARG75 3.6 44.3 1.0 NH1 G:ARG75 3.7 51.6 1.0 CB G:ALA71 3.9 32.0 1.0 CZ G:PHE36 3.9 29.6 1.0 CB G:SER38 4.0 34.2 1.0 CE1 G:PHE36 4.1 33.1 1.0 CZ G:ARG75 4.1 56.9 1.0 CG G:LYS68 4.4 38.9 1.0 CA G:SER38 4.6 32.3 1.0 OE1 G:GLN72 4.8 61.7 1.0 CA G:LYS68 4.8 29.4 1.0 CB G:LYS68 4.9 36.5 1.0

Chlorine binding site 3 out of 3 in the Crystal Structure of Rhesus Macaque Mhc Class I Molecule Mamu-B*098 Complexed with Myristoylated 5-Mer Lipopeptide Derived From Siv Nef Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Rhesus Macaque Mhc Class I Molecule Mamu-B*098 Complexed with Myristoylated 5-Mer Lipopeptide Derived From Siv Nef Protein within 5.0Å range: probe atom residue distance (Å) B Occ J:Cl315 b:66.5 occ:1.00 O J:HOH411 3.4 41.1 1.0 NH2 J:ARG75 3.5 41.5 1.0 NH1 J:ARG75 3.7 51.6 1.0 CZ J:PHE36 4.0 28.0 1.0 CB J:ALA71 4.1 31.3 1.0 CZ J:ARG75 4.1 55.9 1.0 CB J:SER38 4.1 35.6 1.0 CE1 J:PHE36 4.2 33.1 1.0 CG J:LYS68 4.3 35.0 1.0 CA J:SER38 4.8 32.3 1.0 CA J:LYS68 4.8 30.9 1.0 OE1 J:GLN72 4.8 58.7 1.0 CB J:LYS68 4.8 36.8 1.0 CE J:LYS68 4.9 39.0 1.0 CD J:LYS68 5.0 39.7 1.0

D.Morita, Y.Yamamoto, T.Mizutani, T.Ishikawa, J.Suzuki, T.Igarashi, N.Mori, T.Shiina, H.Inoko, H.Fujita, K.Iwai, Y.Tanaka, B.Mikami, M.Sugita. Crystal Structure of the N-Myristoylated Lipopeptide-Bound Mhc Class I Complex Nat Commun V. 7 10356 2016.
ISSN: ESSN 2041-1723
PubMed: 26758274
DOI: 10.1038/NCOMMS10356