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Chlorine in PDB 4zjk: Five Minutes Iron Loaded Human H Ferritin

Enzymatic activity of Five Minutes Iron Loaded Human H Ferritin

All present enzymatic activity of Five Minutes Iron Loaded Human H Ferritin:
1.16.3.1;

Protein crystallography data

The structure of Five Minutes Iron Loaded Human H Ferritin, PDB code: 4zjk was solved by C.Pozzi, F.Di Pisa, S.Mangani, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.07 / 1.56
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 183.800, 183.800, 183.800, 90.00, 90.00, 90.00
R / Rfree (%) 16.8 / 19.2

Other elements in 4zjk:

The structure of Five Minutes Iron Loaded Human H Ferritin also contains other interesting chemical elements:

Magnesium (Mg) 5 atoms
Iron (Fe) 5 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Chlorine atom in the Five Minutes Iron Loaded Human H Ferritin (pdb code 4zjk). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 14 binding sites of Chlorine where determined in the Five Minutes Iron Loaded Human H Ferritin, PDB code: 4zjk:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 14 in 4zjk

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Chlorine binding site 1 out of 14 in the Five Minutes Iron Loaded Human H Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Five Minutes Iron Loaded Human H Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl211

b:10.9
occ:0.25
 FE A:FE2205 2.5 10.0 0.2
NE2 A:HIS173 3.3 9.7 1.0
CE1 A:HIS173 3.4 9.9 1.0
CD2 A:LEU169 4.0 10.1 1.0
ND1 A:HIS173 4.5 10.1 1.0
CD2 A:HIS173 4.5 10.2 1.0
O A:HOH503 4.7 12.4 0.2

Chlorine binding site 2 out of 14 in 4zjk

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Chlorine binding site 2 out of 14 in the Five Minutes Iron Loaded Human H Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Five Minutes Iron Loaded Human H Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl212

b:25.5
occ:1.00
 O A:HOH606 3.1 51.4 1.0
O A:HOH513 3.1 35.5 1.0
N A:GLN14 3.2 12.8 1.0
CG A:GLN14 3.6 15.4 0.5
CG A:GLN14 3.6 15.6 0.5
O A:HOH544 3.7 34.7 1.0
CD2 A:HIS13 3.7 14.1 1.0
CG A:HIS13 3.8 13.3 1.0
NE2 A:HIS13 3.8 14.2 1.0
CA A:HIS13 3.8 12.1 1.0
CB A:GLN14 3.9 14.0 0.5
CB A:GLN14 3.9 14.2 0.5
ND1 A:HIS13 3.9 13.7 1.0
NE2 A:GLN14 3.9 17.1 0.5
CE1 A:HIS13 3.9 13.9 1.0
C A:HIS13 4.0 12.6 1.0
CA A:GLN14 4.1 13.1 0.5
CA A:GLN14 4.1 13.2 0.5
O A:HOH516 4.2 26.1 0.5
CD A:GLN14 4.3 16.3 0.5
CD A:GLN14 4.3 16.5 0.5
CB A:HIS13 4.4 12.8 1.0
O A:TYR12 4.6 11.8 1.0
OE1 A:GLN14 4.8 17.3 0.5
N A:HIS13 5.0 11.6 1.0

Chlorine binding site 3 out of 14 in 4zjk

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Chlorine binding site 3 out of 14 in the Five Minutes Iron Loaded Human H Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Five Minutes Iron Loaded Human H Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl213

b:20.6
occ:0.80
 O A:HOH469 2.7 22.1 1.0
NE2 A:GLN75 3.0 12.4 1.0
O A:HOH507 3.0 28.4 1.0
CG A:GLN75 3.7 11.5 1.0
CD A:GLN75 3.9 12.0 1.0
NZ A:LYS71 4.2 12.3 0.5
CE A:LYS71 4.5 11.8 0.5
CE A:LYS71 4.6 12.0 0.5
CB A:GLN75 5.0 10.6 1.0

Chlorine binding site 4 out of 14 in 4zjk

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Chlorine binding site 4 out of 14 in the Five Minutes Iron Loaded Human H Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Five Minutes Iron Loaded Human H Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl214

b:19.5
occ:1.00
 O A:HOH532 3.1 47.3 1.0
O A:HOH544 3.2 34.7 1.0
O A:HOH513 3.2 35.5 1.0
N A:TYR12 3.3 10.5 1.0
N A:ASN11 3.4 10.9 1.0
O A:TYR12 3.5 11.8 1.0
CG A:ARG9 3.7 11.7 1.0
CD A:ARG9 3.7 12.2 1.0
NE A:ARG9 3.7 12.3 1.0
O A:HOH612 3.9 49.8 1.0
C A:GLN10 3.9 10.9 1.0
CL A:CL221 3.9 32.2 0.7
CA A:GLN10 4.0 11.0 1.0
C A:TYR12 4.1 11.1 1.0
N A:GLN10 4.1 10.7 1.0
CA A:TYR12 4.1 10.7 1.0
CA A:ASN11 4.1 10.6 1.0
C A:ASN11 4.2 10.5 1.0
C A:ARG9 4.4 11.0 1.0
CB A:TYR12 4.4 10.7 1.0
O A:ARG9 4.6 11.7 1.0
CB A:ARG9 4.6 11.1 1.0
O A:GLN10 4.8 10.8 1.0
CZ A:ARG9 5.0 12.3 1.0

Chlorine binding site 5 out of 14 in 4zjk

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Chlorine binding site 5 out of 14 in the Five Minutes Iron Loaded Human H Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Five Minutes Iron Loaded Human H Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl215

b:24.1
occ:0.60
 O A:HOH611 2.9 38.2 1.0
O A:HOH545 2.9 43.6 1.0
O A:HOH363 3.1 14.7 0.6
CB A:ASN25 3.5 9.2 1.0
O A:HOH570 3.7 22.1 0.6
CG A:GLN83 3.8 14.2 1.0
CG A:ASN25 3.8 9.2 1.0
CA A:ARG22 4.1 10.7 0.5
CA A:ARG22 4.1 11.1 0.5
OD1 A:ASN25 4.1 9.7 1.0
CB A:GLN83 4.1 12.6 1.0
CG A:ARG22 4.3 12.0 0.5
MG A:MG208 4.3 16.7 0.6
ND2 A:ASN25 4.4 9.0 1.0
CG A:ARG22 4.4 14.0 0.5
O A:ASN21 4.5 9.7 1.0
CB A:ARG22 4.6 11.2 0.5
O A:ARG22 4.6 10.8 1.0
CB A:ARG22 4.6 12.3 0.5
N A:ARG22 4.8 10.5 1.0
C A:ARG22 4.8 10.7 1.0
O A:HOH627 4.9 24.6 0.6
C A:ASN21 5.0 10.0 1.0
CA A:ASN25 5.0 9.1 1.0

Chlorine binding site 6 out of 14 in 4zjk

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Chlorine binding site 6 out of 14 in the Five Minutes Iron Loaded Human H Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Five Minutes Iron Loaded Human H Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl216

b:22.5
occ:0.70
 O A:THR135 3.1 15.9 1.0
N A:GLU140 3.1 12.7 1.0
N A:ASN139 3.2 11.9 1.0
O A:HOH481 3.2 18.1 0.5
O A:HOH496 3.3 44.1 1.0
O A:HOH470 3.4 24.8 1.0
N A:TYR137 3.5 12.6 1.0
O A:GLU134 3.5 14.6 1.0
CB A:ASN139 3.6 12.8 1.0
C A:HIS136 3.6 14.0 1.0
CA A:ASN139 3.6 12.3 1.0
C A:THR135 3.6 14.8 1.0
CG A:GLU140 3.6 21.0 1.0
N A:LEU138 3.8 11.8 1.0
C A:ASN139 3.8 12.3 1.0
C A:TYR137 3.8 12.0 1.0
N A:HIS136 3.9 14.3 1.0
CA A:HIS136 4.0 14.2 1.0
O A:HIS136 4.0 14.3 1.0
CA A:TYR137 4.1 12.1 1.0
CB A:GLU140 4.1 16.5 1.0
C A:LEU138 4.2 11.7 1.0
CA A:GLU140 4.2 13.8 1.0
O A:TYR137 4.2 11.8 1.0
OE2 A:GLU140 4.5 28.6 1.0
CA A:LEU138 4.5 11.7 1.0
C A:GLU134 4.6 13.7 1.0
CD A:GLU140 4.6 25.1 1.0
CA A:THR135 4.6 14.7 1.0
O A:HOH459 4.6 15.4 0.5
O A:HOH565 4.8 19.7 0.5
O A:HOH416 4.8 26.2 1.0
CG A:ASN139 4.9 13.2 1.0
O A:ASN139 4.9 11.7 1.0
N A:THR135 5.0 13.5 1.0

Chlorine binding site 7 out of 14 in 4zjk

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Chlorine binding site 7 out of 14 in the Five Minutes Iron Loaded Human H Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Five Minutes Iron Loaded Human H Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl217

b:15.4
occ:0.60
 ND2 A:ASN154 2.6 12.6 0.5
ND1 A:HIS151 2.9 9.8 1.0
O A:HOH303 3.0 21.5 1.0
ND2 A:ASN154 3.3 8.6 0.5
CE1 A:HIS151 3.5 10.0 1.0
C A:ASP150 3.5 9.7 1.0
O A:ASP150 3.5 9.8 1.0
O A:HOH510 3.5 35.3 1.0
N A:HIS151 3.6 9.5 1.0
O A:HOH607 3.6 26.0 1.0
CB A:ASP150 3.6 10.3 1.0
CG A:ASN154 3.7 12.3 0.5
CA A:HIS151 3.8 9.5 1.0
CG A:HIS151 4.0 9.6 1.0
CG2 A:THR174 4.2 10.9 1.0
CA A:ASP150 4.2 9.9 1.0
CG A:ASN154 4.2 9.2 0.5
O A:HOH529 4.3 40.0 1.0
CE1 A:PHE170 4.3 10.4 1.0
CB A:ASN154 4.5 11.6 0.5
CB A:HIS151 4.5 9.5 1.0
OD1 A:ASN154 4.5 12.8 0.5
CZ A:PHE170 4.5 10.1 1.0
CB A:ASN154 4.6 9.4 0.5
O A:HOH377 4.7 16.5 1.0
O A:HOH301 4.7 28.4 1.0
NE2 A:HIS151 4.8 10.1 1.0
O A:GLU147 4.8 10.3 1.0
CG A:ASP150 4.9 11.2 1.0
OG1 A:THR174 4.9 11.3 1.0
C A:HIS151 5.0 9.5 1.0

Chlorine binding site 8 out of 14 in 4zjk

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Chlorine binding site 8 out of 14 in the Five Minutes Iron Loaded Human H Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Five Minutes Iron Loaded Human H Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl218

b:20.8
occ:0.80
 OE1 A:GLN83 2.9 15.8 0.6
N A:ASP84 3.1 10.4 1.0
CG A:ASP84 3.4 10.9 1.0
OD1 A:ASP84 3.5 10.8 1.0
CB A:GLN83 3.6 12.6 1.0
CA A:GLN83 3.7 11.7 1.0
OD2 A:ASP84 3.7 11.5 1.0
CB A:ASP84 3.9 10.4 1.0
CD A:GLN83 3.9 15.0 0.6
C A:GLN83 3.9 11.0 1.0
CA A:ASP84 4.1 10.1 1.0
CG A:GLN83 4.3 14.2 1.0
O A:HOH329 4.4 15.9 1.0
O A:HOH313 4.5 17.1 0.5
O A:HOH625 4.5 29.9 1.0
MG A:MG206 4.7 14.5 0.5
O A:HOH370 4.8 18.8 1.0

Chlorine binding site 9 out of 14 in 4zjk

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Chlorine binding site 9 out of 14 in the Five Minutes Iron Loaded Human H Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Five Minutes Iron Loaded Human H Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl219

b:19.1
occ:0.80
 O A:HOH588 3.0 12.7 1.0
CA A:ASN125 3.5 11.1 0.5
CA A:ASN125 3.5 11.3 0.5
OD1 A:ASN125 3.6 11.7 0.5
C A:ASN125 3.7 11.1 1.0
CD A:PRO127 3.9 9.4 1.0
N A:ASP126 3.9 10.5 1.0
CB A:ASN125 4.0 11.3 0.5
N A:PRO127 4.0 9.3 1.0
CB A:ASN125 4.2 11.8 0.5
CB A:PRO127 4.2 9.6 1.0
CG A:ASN125 4.2 11.3 0.5
O A:ASN125 4.3 10.9 1.0
CA A:PRO127 4.3 9.4 1.0
CG A:PRO127 4.4 9.3 1.0
C A:ASP126 4.5 9.6 1.0
N A:ASN125 4.6 11.3 1.0
O A:THR122 4.7 12.0 1.0
OD1 A:ASN125 4.8 12.2 0.5
CA A:ASP126 4.8 9.9 1.0

Chlorine binding site 10 out of 14 in 4zjk

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Chlorine binding site 10 out of 14 in the Five Minutes Iron Loaded Human H Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Five Minutes Iron Loaded Human H Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl220

b:18.5
occ:0.75
 ND2 A:ASN139 3.4 13.7 1.0
O A:HOH499 3.6 37.3 1.0
CD A:LYS143 3.9 14.9 1.0
O A:HOH369 4.0 18.5 1.0
CG A:LYS143 4.2 13.3 1.0
OD1 A:ASN139 4.2 13.3 1.0
CG A:ASN139 4.2 13.2 1.0
CE A:LYS143 4.9 15.7 0.7

Reference:

C.Pozzi, F.Di Pisa, C.Bernacchioni, S.Ciambellotti, P.Turano, S.Mangani. Iron Binding to Human Heavy-Chain Ferritin. Acta Crystallogr.,Sect.D V. 71 1909 2015.
ISSN: ESSN 1399-0047
PubMed: 26327381
DOI: 10.1107/S1399004715013073
Page generated: Fri Jul 26 04:41:02 2024

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