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Chlorine in PDB 4zku: P22 Tail Needle GP26 Crystallized at pH 10.0

Protein crystallography data

The structure of P22 Tail Needle GP26 Crystallized at pH 10.0, PDB code: 4zku was solved by R.S.Sankhala, G.Cingolani, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.82 / 2.50
Space group P 3
Cell size a, b, c (Å), α, β, γ (°) 43.200, 43.200, 271.234, 90.00, 90.00, 120.00
R / Rfree (%) 18.4 / 22.5

Other elements in 4zku:

The structure of P22 Tail Needle GP26 Crystallized at pH 10.0 also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the P22 Tail Needle GP26 Crystallized at pH 10.0 (pdb code 4zku). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the P22 Tail Needle GP26 Crystallized at pH 10.0, PDB code: 4zku:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4zku

Go back to Chlorine Binding Sites List in 4zku
Chlorine binding site 1 out of 2 in the P22 Tail Needle GP26 Crystallized at pH 10.0


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of P22 Tail Needle GP26 Crystallized at pH 10.0 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:9.4
occ:0.33
ND2 A:ASN94 3.2 12.1 1.0
CB A:ASN94 3.9 17.4 1.0
CG A:ASN94 4.0 12.1 1.0
CG1 A:ILE91 4.3 9.8 1.0
CA A:ILE91 4.4 11.5 1.0
CG2 A:ILE91 4.4 8.6 1.0
CB A:ILE91 4.6 10.7 1.0

Chlorine binding site 2 out of 2 in 4zku

Go back to Chlorine Binding Sites List in 4zku
Chlorine binding site 2 out of 2 in the P22 Tail Needle GP26 Crystallized at pH 10.0


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of P22 Tail Needle GP26 Crystallized at pH 10.0 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl301

b:20.3
occ:0.33
ND2 B:ASN94 3.4 15.5 1.0
CG1 B:ILE91 3.7 18.6 1.0
CB B:ASN94 4.0 18.8 1.0
CG2 B:ILE91 4.1 26.1 1.0
CA B:ILE91 4.1 13.4 1.0
CB B:ILE91 4.2 18.7 1.0
CG B:ASN94 4.2 13.8 1.0
CD1 B:ILE91 4.6 16.7 1.0
O B:ILE91 4.7 17.4 1.0
C B:ILE91 5.0 16.4 1.0

Reference:

A.Bhardwaj, R.S.Sankhala, A.S.Olia, D.Brooke, S.R.Casjens, D.J.Taylor, P.E.Prevelige, G.Cingolani. Structural Plasticity of the Protein Plug That Traps Newly Packaged Genomes in Podoviridae Virions. J.Biol.Chem. V. 291 215 2016.
ISSN: ESSN 1083-351X
PubMed: 26574546
DOI: 10.1074/JBC.M115.696260
Page generated: Sat Dec 12 11:28:31 2020

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