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Chlorine in PDB 4zr8: Structure of Uroporphyrinogen Decarboxylase From Acinetobacter Baumannii

Enzymatic activity of Structure of Uroporphyrinogen Decarboxylase From Acinetobacter Baumannii

All present enzymatic activity of Structure of Uroporphyrinogen Decarboxylase From Acinetobacter Baumannii:
4.1.1.37;

Protein crystallography data

The structure of Structure of Uroporphyrinogen Decarboxylase From Acinetobacter Baumannii, PDB code: 4zr8 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.81 / 1.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 65.540, 83.380, 68.460, 90.00, 106.97, 90.00
R / Rfree (%) 12.9 / 16.1

Other elements in 4zr8:

The structure of Structure of Uroporphyrinogen Decarboxylase From Acinetobacter Baumannii also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Uroporphyrinogen Decarboxylase From Acinetobacter Baumannii (pdb code 4zr8). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of Uroporphyrinogen Decarboxylase From Acinetobacter Baumannii, PDB code: 4zr8:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4zr8

Go back to Chlorine Binding Sites List in 4zr8
Chlorine binding site 1 out of 2 in the Structure of Uroporphyrinogen Decarboxylase From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Uroporphyrinogen Decarboxylase From Acinetobacter Baumannii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:21.8
occ:1.00
O A:HOH846 3.0 32.8 1.0
O1 A:EDO403 3.0 41.7 1.0
N A:ARG27 3.1 14.0 1.0
CA A:MET26 3.6 13.3 1.0
C1 A:EDO403 3.6 41.9 1.0
CZ A:PHE207 3.7 13.9 1.0
CB A:MET26 3.8 13.8 1.0
C A:MET26 3.8 13.6 1.0
CD1 A:ILE73 3.9 16.7 1.0
CG A:MET26 3.9 15.1 1.0
CZ3 A:TRP24 4.0 12.4 1.0
CA A:ARG27 4.0 14.2 0.5
CA A:ARG27 4.0 13.8 0.5
CD A:ARG27 4.1 21.8 0.5
CE2 A:PHE207 4.1 14.2 1.0
CG A:ARG27 4.2 20.2 0.5
CH2 A:TRP24 4.2 13.1 1.0
CG A:ARG27 4.3 19.4 0.5
NE A:ARG27 4.3 23.4 0.5
CG2 A:ILE73 4.4 15.4 1.0
CE1 A:PHE207 4.6 13.1 1.0
CG1 A:ILE73 4.7 16.4 1.0
CB A:ARG27 4.7 17.0 0.5
CB A:ARG27 4.8 16.3 0.5
N A:MET26 4.9 12.2 1.0
O A:HOH657 4.9 27.4 1.0
O A:HOH768 4.9 17.5 1.0
C2 A:EDO403 4.9 42.1 1.0

Chlorine binding site 2 out of 2 in 4zr8

Go back to Chlorine Binding Sites List in 4zr8
Chlorine binding site 2 out of 2 in the Structure of Uroporphyrinogen Decarboxylase From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Uroporphyrinogen Decarboxylase From Acinetobacter Baumannii within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl404

b:27.8
occ:1.00
O B:HOH805 2.7 30.5 1.0
N B:ARG27 3.1 14.5 1.0
O1 B:EDO403 3.1 39.3 1.0
CA B:MET26 3.6 13.8 1.0
C1 B:EDO403 3.7 38.9 1.0
CD1 B:ILE73 3.8 16.6 1.0
C B:MET26 3.9 14.4 1.0
CB B:MET26 3.9 15.1 1.0
CZ B:PHE207 3.9 14.4 1.0
CG B:MET26 4.0 15.9 1.0
CZ3 B:TRP24 4.0 13.9 1.0
CA B:ARG27 4.0 14.3 1.0
CD B:ARG27 4.2 30.4 1.0
CG2 B:ILE73 4.3 17.3 1.0
CH2 B:TRP24 4.3 13.9 1.0
NE B:ARG27 4.3 34.4 1.0
CE1 B:PHE207 4.3 15.6 1.0
CG B:ARG27 4.4 23.6 1.0
O B:HOH752 4.6 22.0 1.0
CG1 B:ILE73 4.7 17.5 1.0
CE2 B:PHE207 4.8 15.0 1.0
CB B:ARG27 4.8 18.6 1.0
O B:HOH636 4.9 29.0 1.0
N B:MET26 4.9 13.1 1.0

Reference:

J.Abendroth, J.W.Fairman, D.D.Lorimer, T.E.Edwards. Structure of Uroporphyrinogen Decarboxylase From Acinetobacter Baumannii To Be Published.
Page generated: Sat Dec 12 11:28:50 2020

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