Chlorine in PDB 4zya: The N-Terminal Extension Domain of Human Asparaginyl-Trna Synthetase

Enzymatic activity of The N-Terminal Extension Domain of Human Asparaginyl-Trna Synthetase

All present enzymatic activity of The N-Terminal Extension Domain of Human Asparaginyl-Trna Synthetase:
6.1.1.22;

Protein crystallography data

The structure of The N-Terminal Extension Domain of Human Asparaginyl-Trna Synthetase, PDB code: 4zya was solved by J.S.Park, M.C.Park, P.Goughnour, H.S.Kim, S.J.Kim, H.J.Kim, S.H.Kim, B.W.Han, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.02 / 1.65
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 32.626, 32.626, 215.921, 90.00, 90.00, 120.00
R / Rfree (%) 20.6 / 25.4

Other elements in 4zya:

The structure of The N-Terminal Extension Domain of Human Asparaginyl-Trna Synthetase also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The N-Terminal Extension Domain of Human Asparaginyl-Trna Synthetase (pdb code 4zya). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the The N-Terminal Extension Domain of Human Asparaginyl-Trna Synthetase, PDB code: 4zya:

Chlorine binding site 1 out of 1 in 4zya

Go back to Chlorine Binding Sites List in 4zya
Chlorine binding site 1 out of 1 in the The N-Terminal Extension Domain of Human Asparaginyl-Trna Synthetase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The N-Terminal Extension Domain of Human Asparaginyl-Trna Synthetase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl103

b:18.9
occ:1.00
 O B:HOH245 2.8 24.6 1.0
O B:HOH262 3.3 43.2 1.0
O A:HOH230 3.4 17.4 1.0
N B:LEU30 3.4 17.7 1.0
O A:HOH226 3.5 18.8 1.0
N B:GLY29 3.6 15.8 1.0
N A:LEU30 3.6 18.7 1.0
CB A:LEU30 3.7 22.8 1.0
CB A:THR28 3.7 17.6 1.0
CB B:THR28 3.7 16.1 1.0
N A:GLY29 4.0 18.0 1.0
CB B:LEU30 4.0 19.1 1.0
CA B:GLY29 4.1 14.3 1.0
CA A:LEU30 4.2 17.1 1.0
C B:GLY29 4.2 16.1 1.0
CG2 A:THR28 4.3 15.6 1.0
CA B:LEU30 4.3 16.9 1.0
CD1 A:LEU30 4.3 28.1 1.0
C B:THR28 4.4 15.6 1.0
OG1 A:THR28 4.4 19.4 1.0
CA B:THR28 4.4 15.4 1.0
CG2 B:THR28 4.4 22.2 1.0
CG A:LEU30 4.5 30.6 1.0
OG1 B:THR28 4.5 17.1 1.0
C A:GLY29 4.5 14.1 1.0
CA A:GLY29 4.6 14.8 1.0
CA A:THR28 4.6 14.0 1.0
C A:THR28 4.6 15.7 1.0
CD2 A:LEU30 4.8 29.7 1.0

Reference:

J.S.Park, M.C.Park, K.Y.Lee, P.C.Goughnour, S.J.Jeong, H.S.Kim, H.J.Kim, B.J.Lee, S.Kim, B.W.Han. Unique N-Terminal Extension Domain of Human Asparaginyl-Trna Synthetase Elicits CCR3-Mediated Chemokine Activity. Int. J. Biol. Macromol. V. 120 835 2018.
ISSN: ISSN 1879-0003
PubMed: 30171954
DOI: 10.1016/J.IJBIOMAC.2018.08.171
Page generated: Sat Dec 12 11:29:12 2020

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