Chlorine in PDB 5a4n: Crystal Structure of BPSL1147, A PC4 Homolog From Burkholderia Pseudomallei K96243 (Tetragonal Crystal Form)
Protein crystallography data
The structure of Crystal Structure of BPSL1147, A PC4 Homolog From Burkholderia Pseudomallei K96243 (Tetragonal Crystal Form), PDB code: 5a4n
was solved by
S.Werten,
N.Bayer,
W.Hinrichs,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
56.53 /
1.96
|
Space group
|
P 43 2 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
56.527,
56.527,
142.524,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
21 /
25.2
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of BPSL1147, A PC4 Homolog From Burkholderia Pseudomallei K96243 (Tetragonal Crystal Form)
(pdb code 5a4n). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Crystal Structure of BPSL1147, A PC4 Homolog From Burkholderia Pseudomallei K96243 (Tetragonal Crystal Form), PDB code: 5a4n:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 5a4n
Go back to
Chlorine Binding Sites List in 5a4n
Chlorine binding site 1 out
of 4 in the Crystal Structure of BPSL1147, A PC4 Homolog From Burkholderia Pseudomallei K96243 (Tetragonal Crystal Form)
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of BPSL1147, A PC4 Homolog From Burkholderia Pseudomallei K96243 (Tetragonal Crystal Form) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1074
b:45.5
occ:1.00
|
CD
|
A:PRO58
|
3.3
|
35.4
|
1.0
|
N
|
A:GLU59
|
3.4
|
31.9
|
1.0
|
CG
|
A:GLU59
|
3.6
|
44.6
|
1.0
|
N
|
A:PRO58
|
3.7
|
32.2
|
1.0
|
CB
|
A:GLU59
|
3.8
|
39.9
|
1.0
|
CD
|
A:ARG57
|
3.9
|
35.9
|
1.0
|
CB
|
A:ARG57
|
3.9
|
31.9
|
1.0
|
CB
|
A:PRO58
|
4.0
|
35.9
|
1.0
|
CG
|
A:ARG57
|
4.0
|
34.1
|
1.0
|
NE
|
A:ARG31
|
4.0
|
57.0
|
1.0
|
CG
|
A:PRO58
|
4.0
|
36.5
|
1.0
|
CZ
|
A:ARG31
|
4.1
|
62.5
|
1.0
|
CA
|
A:GLU59
|
4.2
|
33.8
|
1.0
|
CA
|
A:PRO58
|
4.2
|
32.7
|
1.0
|
C
|
A:ARG57
|
4.2
|
28.5
|
1.0
|
C
|
A:PRO58
|
4.2
|
31.2
|
1.0
|
CD
|
A:ARG31
|
4.3
|
52.9
|
1.0
|
OE2
|
A:GLU59
|
4.3
|
52.1
|
1.0
|
CD
|
A:GLU59
|
4.4
|
51.8
|
1.0
|
NH1
|
A:ARG31
|
4.4
|
60.7
|
1.0
|
NH2
|
A:ARG31
|
4.5
|
65.6
|
1.0
|
CA
|
A:ARG57
|
4.6
|
29.2
|
1.0
|
NE
|
A:ARG57
|
4.6
|
37.5
|
1.0
|
O
|
A:ARG57
|
4.9
|
28.2
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 5a4n
Go back to
Chlorine Binding Sites List in 5a4n
Chlorine binding site 2 out
of 4 in the Crystal Structure of BPSL1147, A PC4 Homolog From Burkholderia Pseudomallei K96243 (Tetragonal Crystal Form)
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of BPSL1147, A PC4 Homolog From Burkholderia Pseudomallei K96243 (Tetragonal Crystal Form) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1075
b:51.1
occ:1.00
|
O
|
A:HOH2025
|
3.1
|
29.2
|
1.0
|
NH1
|
A:ARG57
|
3.2
|
39.1
|
1.0
|
CE2
|
A:TYR33
|
3.6
|
35.2
|
1.0
|
CE
|
B:LYS15
|
3.8
|
55.0
|
1.0
|
CD
|
A:ARG57
|
3.8
|
35.9
|
1.0
|
CG
|
A:ARG57
|
4.0
|
34.1
|
1.0
|
CB
|
A:ARG57
|
4.0
|
31.9
|
1.0
|
CZ
|
A:ARG57
|
4.3
|
39.1
|
1.0
|
OH
|
A:TYR33
|
4.4
|
40.5
|
1.0
|
CD2
|
A:TYR33
|
4.5
|
32.4
|
1.0
|
CZ
|
A:TYR33
|
4.5
|
37.2
|
1.0
|
NE
|
A:ARG57
|
4.5
|
37.5
|
1.0
|
NZ
|
B:LYS15
|
4.6
|
54.9
|
1.0
|
CG
|
B:LYS15
|
4.7
|
52.9
|
1.0
|
CD
|
B:LYS15
|
4.7
|
52.9
|
1.0
|
N
|
A:ARG57
|
4.8
|
27.2
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 5a4n
Go back to
Chlorine Binding Sites List in 5a4n
Chlorine binding site 3 out
of 4 in the Crystal Structure of BPSL1147, A PC4 Homolog From Burkholderia Pseudomallei K96243 (Tetragonal Crystal Form)
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of BPSL1147, A PC4 Homolog From Burkholderia Pseudomallei K96243 (Tetragonal Crystal Form) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl1074
b:50.0
occ:1.00
|
O
|
B:HOH2017
|
3.1
|
59.8
|
1.0
|
N
|
B:GLU59
|
3.3
|
33.2
|
1.0
|
CG
|
B:GLU59
|
3.4
|
44.5
|
1.0
|
CB
|
B:GLU59
|
3.5
|
40.2
|
1.0
|
CD
|
B:PRO58
|
3.7
|
32.6
|
1.0
|
CD
|
B:ARG57
|
3.7
|
42.5
|
1.0
|
N
|
B:PRO58
|
3.8
|
30.2
|
1.0
|
CB
|
B:ARG57
|
3.8
|
38.6
|
1.0
|
CG
|
B:ARG57
|
3.9
|
40.2
|
1.0
|
CA
|
B:GLU59
|
3.9
|
35.3
|
1.0
|
CD
|
B:GLU59
|
4.0
|
50.8
|
1.0
|
OE1
|
B:GLU59
|
4.2
|
55.9
|
1.0
|
C
|
B:PRO58
|
4.2
|
30.9
|
1.0
|
C
|
B:ARG57
|
4.2
|
35.1
|
1.0
|
CB
|
B:PRO58
|
4.3
|
34.1
|
1.0
|
CA
|
B:PRO58
|
4.3
|
30.7
|
1.0
|
CG
|
B:PRO58
|
4.4
|
34.3
|
1.0
|
NE
|
B:ARG57
|
4.4
|
43.2
|
1.0
|
CA
|
B:ARG57
|
4.6
|
36.7
|
1.0
|
OE2
|
B:GLU59
|
4.7
|
53.2
|
1.0
|
O
|
B:ARG57
|
4.9
|
32.2
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 5a4n
Go back to
Chlorine Binding Sites List in 5a4n
Chlorine binding site 4 out
of 4 in the Crystal Structure of BPSL1147, A PC4 Homolog From Burkholderia Pseudomallei K96243 (Tetragonal Crystal Form)
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of BPSL1147, A PC4 Homolog From Burkholderia Pseudomallei K96243 (Tetragonal Crystal Form) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl1075
b:64.1
occ:1.00
|
NH1
|
B:ARG57
|
3.1
|
42.4
|
1.0
|
CG
|
B:ARG57
|
3.3
|
40.2
|
1.0
|
N
|
B:ARG57
|
3.4
|
35.1
|
1.0
|
NZ
|
A:LYS15
|
3.4
|
49.0
|
1.0
|
CB
|
B:ARG57
|
3.5
|
38.6
|
1.0
|
CG
|
A:LYS15
|
3.7
|
41.9
|
1.0
|
CD
|
B:ARG57
|
3.9
|
42.5
|
1.0
|
CE1
|
B:TYR33
|
4.0
|
54.9
|
1.0
|
CD1
|
B:LEU60
|
4.0
|
35.9
|
1.0
|
CA
|
B:ARG57
|
4.0
|
36.7
|
1.0
|
CZ
|
B:ARG57
|
4.2
|
42.9
|
1.0
|
CE
|
A:LYS15
|
4.3
|
45.1
|
1.0
|
CD
|
A:LYS15
|
4.4
|
44.2
|
1.0
|
C
|
B:ILE56
|
4.4
|
34.1
|
1.0
|
NE
|
B:ARG57
|
4.5
|
43.2
|
1.0
|
CD1
|
B:TYR33
|
4.5
|
50.5
|
1.0
|
O
|
B:SER55
|
4.6
|
39.2
|
1.0
|
CA
|
B:ILE56
|
4.7
|
35.3
|
1.0
|
CB
|
A:LYS15
|
4.8
|
41.0
|
1.0
|
|
Reference:
S.Werten,
C.Kohler,
N.Bayer,
I.Steinmetz,
W.Hinrichs.
Structural Analysis and Knock-Out of A Burkholderia Pseudomallei Homolog of the Eukaryotic Transcription Coactivator PC4. Gene V. 557 140 2016.
ISSN: ISSN 0378-1119
PubMed: 26625975
DOI: 10.1016/J.GENE.2015.11.037
Page generated: Fri Jul 26 04:57:47 2024
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