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Chlorine in PDB 5a8j: Crystal Structure of the Arnb Paralog VWA2 From Sulfolobus Acidocaldarius

Protein crystallography data

The structure of Crystal Structure of the Arnb Paralog VWA2 From Sulfolobus Acidocaldarius, PDB code: 5a8j was solved by L.Hoffmann, K.Anders, J.Reimann, U.Linne, L.-O.Essen, S.-V.Albers, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.658 / 1.46
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 69.640, 74.280, 145.550, 90.00, 90.00, 90.00
R / Rfree (%) 16.51 / 20.13

Other elements in 5a8j:

The structure of Crystal Structure of the Arnb Paralog VWA2 From Sulfolobus Acidocaldarius also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Arnb Paralog VWA2 From Sulfolobus Acidocaldarius (pdb code 5a8j). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the Arnb Paralog VWA2 From Sulfolobus Acidocaldarius, PDB code: 5a8j:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5a8j

Go back to Chlorine Binding Sites List in 5a8j
Chlorine binding site 1 out of 2 in the Crystal Structure of the Arnb Paralog VWA2 From Sulfolobus Acidocaldarius


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Arnb Paralog VWA2 From Sulfolobus Acidocaldarius within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1372

b:59.5
occ:1.00
H A:GLN98 2.8 25.6 1.0
HA A:LYS97 3.2 26.4 1.0
HD2 A:LYS97 3.4 37.2 1.0
O A:HOH2249 3.5 39.2 1.0
O A:HOH2301 3.6 45.5 1.0
N A:GLN98 3.6 21.3 1.0
HD3 A:LYS97 3.7 37.2 1.0
HB3 A:GLN98 3.7 29.9 1.0
HB3 A:LYS97 3.9 28.4 1.0
CD A:LYS97 4.0 31.0 1.0
CA A:LYS97 4.0 22.0 1.0
C A:LYS97 4.4 20.1 1.0
CB A:LYS97 4.4 23.6 1.0
CB A:GLN98 4.4 24.9 1.0
HB2 A:GLN98 4.5 29.9 1.0
CA A:GLN98 4.6 21.8 1.0
HZ3 A:LYS97 4.7 43.4 1.0
O A:GLY96 4.7 23.6 1.0
HZ1 A:LYS97 4.7 43.4 1.0
O A:GLN98 4.8 23.6 1.0
CG A:LYS97 4.8 26.2 1.0

Chlorine binding site 2 out of 2 in 5a8j

Go back to Chlorine Binding Sites List in 5a8j
Chlorine binding site 2 out of 2 in the Crystal Structure of the Arnb Paralog VWA2 From Sulfolobus Acidocaldarius


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Arnb Paralog VWA2 From Sulfolobus Acidocaldarius within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1375

b:50.4
occ:0.64
O A:HOH2307 3.9 50.6 1.0
CZ A:ARG286 4.0 27.4 1.0
NE A:ARG286 4.0 26.3 1.0
HD3 A:ARG286 4.1 28.3 1.0
HE A:ARG286 4.2 31.6 1.0
NH2 A:ARG286 4.2 30.6 1.0
NH1 A:ARG286 4.3 27.0 1.0
HH21 A:ARG286 4.4 36.7 1.0
CD A:ARG286 4.5 23.6 1.0
HH11 A:ARG286 4.5 32.4 1.0
HH22 A:ARG286 4.6 36.7 1.0
HD2 A:ARG286 4.6 28.3 1.0
HH12 A:ARG286 4.6 32.4 1.0
O3 A:CIT1373 4.8 21.6 0.4
O1 A:CIT1373 4.9 24.8 0.4

Reference:

L.Hoffmann, K.Anders, J.Reimann, U.Linne, L.-O.Essen, S.-V.Albers. Phosphorylation-Dependent Interaction Between An Archaeal Von Willebrand and Fha Domain Recruits Arna-Arnb Complex to Dna For Repression of Motility To Be Published.
Page generated: Sat Dec 12 11:29:47 2020

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