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Chlorine in PDB 5a8p: Crystal Structure Beta-Glucanase SDGLUC5_26A From Saccharophagus Degradans in Complex with Tetrasaccharide B

Enzymatic activity of Crystal Structure Beta-Glucanase SDGLUC5_26A From Saccharophagus Degradans in Complex with Tetrasaccharide B

All present enzymatic activity of Crystal Structure Beta-Glucanase SDGLUC5_26A From Saccharophagus Degradans in Complex with Tetrasaccharide B:
3.2.1.73;

Protein crystallography data

The structure of Crystal Structure Beta-Glucanase SDGLUC5_26A From Saccharophagus Degradans in Complex with Tetrasaccharide B, PDB code: 5a8p was solved by G.Sulzenbacher, M.Lafond, T.Freyd, B.Henrissat, R.M.Coutinho, J.G.Berrin, M.L.Garron, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.70 / 2.20
Space group P 41 3 2
Cell size a, b, c (Å), α, β, γ (°) 144.382, 144.382, 144.382, 90.00, 90.00, 90.00
R / Rfree (%) 15.2 / 19

Other elements in 5a8p:

The structure of Crystal Structure Beta-Glucanase SDGLUC5_26A From Saccharophagus Degradans in Complex with Tetrasaccharide B also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure Beta-Glucanase SDGLUC5_26A From Saccharophagus Degradans in Complex with Tetrasaccharide B (pdb code 5a8p). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure Beta-Glucanase SDGLUC5_26A From Saccharophagus Degradans in Complex with Tetrasaccharide B, PDB code: 5a8p:

Chlorine binding site 1 out of 1 in 5a8p

Go back to Chlorine Binding Sites List in 5a8p
Chlorine binding site 1 out of 1 in the Crystal Structure Beta-Glucanase SDGLUC5_26A From Saccharophagus Degradans in Complex with Tetrasaccharide B


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure Beta-Glucanase SDGLUC5_26A From Saccharophagus Degradans in Complex with Tetrasaccharide B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1369

b:21.4
occ:1.00
 O A:HOH2163 3.1 25.7 1.0
N A:ASN231 3.2 17.9 1.0
NE A:ARG200 3.2 21.5 1.0
O A:HOH2173 3.3 39.6 1.0
N A:THR192 3.3 18.5 1.0
CA A:THR191 3.6 17.1 1.0
OG1 A:THR191 3.7 14.7 1.0
CB A:PHE230 3.7 19.8 1.0
CA A:ASN231 3.8 19.7 1.0
OG1 A:THR192 3.9 17.9 1.0
NH2 A:ARG200 3.9 23.8 1.0
C A:THR191 4.0 17.6 1.0
CZ A:ARG200 4.0 21.8 1.0
CD A:ARG200 4.1 22.2 1.0
CB A:THR191 4.1 16.0 1.0
C A:PHE230 4.3 18.2 1.0
CA A:PHE230 4.4 18.0 1.0
CA A:THR192 4.4 17.9 1.0
CG A:PHE230 4.5 20.8 1.0
CB A:THR192 4.6 18.3 1.0
CB A:ASN231 4.6 21.6 1.0
N A:MET193 4.7 18.4 1.0
O A:PRO190 4.7 18.5 1.0
N A:THR191 4.7 16.6 1.0
CG2 A:THR192 4.7 19.4 1.0
CB A:ARG200 4.8 20.5 1.0
CD1 A:PHE230 4.9 21.2 1.0
C A:THR192 5.0 16.9 1.0

Reference:

M.Lafond, G.Sulzenbacher, T.Freyd, B.Henrissat, J.G.Berrin, M.L.Garron. The Quaternary Structure of A Glycoside Hydrolase Dictates Specificity Towards Beta-Glucans J.Biol.Chem. V. 291 7183 2016.
ISSN: ISSN 0021-9258
PubMed: 26755730
DOI: 10.1074/JBC.M115.695999
Page generated: Fri Jul 26 05:01:18 2024

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