Atomistry » Chlorine » PDB 4zyf-5aa2 » 5a94
Atomistry »
  Chlorine »
    PDB 4zyf-5aa2 »
      5a94 »

Chlorine in PDB 5a94: Crystal Structure of Beta-Glucanase SDGLUC5_26A From Saccharophagus Degradans in Complex with Tetrasaccharide A, Form 1

Enzymatic activity of Crystal Structure of Beta-Glucanase SDGLUC5_26A From Saccharophagus Degradans in Complex with Tetrasaccharide A, Form 1

All present enzymatic activity of Crystal Structure of Beta-Glucanase SDGLUC5_26A From Saccharophagus Degradans in Complex with Tetrasaccharide A, Form 1:
3.2.1.73;

Protein crystallography data

The structure of Crystal Structure of Beta-Glucanase SDGLUC5_26A From Saccharophagus Degradans in Complex with Tetrasaccharide A, Form 1, PDB code: 5a94 was solved by G.Sulzenbacher, M.Lafond, T.Freyd, B.Henrissat, R.M.Coutinho, J.G.Berrin, M.L.Garron, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.42 / 1.99
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 188.643, 132.753, 131.352, 90.00, 133.78, 90.00
R / Rfree (%) 17.9 / 19

Other elements in 5a94:

The structure of Crystal Structure of Beta-Glucanase SDGLUC5_26A From Saccharophagus Degradans in Complex with Tetrasaccharide A, Form 1 also contains other interesting chemical elements:

Magnesium (Mg) 6 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Beta-Glucanase SDGLUC5_26A From Saccharophagus Degradans in Complex with Tetrasaccharide A, Form 1 (pdb code 5a94). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of Beta-Glucanase SDGLUC5_26A From Saccharophagus Degradans in Complex with Tetrasaccharide A, Form 1, PDB code: 5a94:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 5a94

Go back to Chlorine Binding Sites List in 5a94
Chlorine binding site 1 out of 6 in the Crystal Structure of Beta-Glucanase SDGLUC5_26A From Saccharophagus Degradans in Complex with Tetrasaccharide A, Form 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Beta-Glucanase SDGLUC5_26A From Saccharophagus Degradans in Complex with Tetrasaccharide A, Form 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:21.4
occ:1.00
O A:HOH2166 2.9 22.4 1.0
O A:HOH2177 3.1 27.0 1.0
N A:ASN231 3.1 17.8 1.0
NE A:ARG200 3.1 21.2 1.0
N A:THR192 3.4 16.3 1.0
CB A:PHE230 3.6 19.2 1.0
CA A:THR191 3.7 16.9 1.0
CA A:ASN231 3.7 17.5 1.0
NH2 A:ARG200 3.8 23.9 1.0
OG1 A:THR191 3.8 16.4 1.0
OG1 A:THR192 3.8 15.9 1.0
CZ A:ARG200 3.9 22.7 1.0
C A:THR191 4.0 17.0 1.0
CD A:ARG200 4.1 21.1 1.0
C A:PHE230 4.1 17.7 1.0
CB A:THR191 4.2 16.6 1.0
CA A:PHE230 4.3 18.3 1.0
CG A:PHE230 4.4 20.1 1.0
CA A:THR192 4.5 16.2 1.0
CB A:THR192 4.6 16.4 1.0
CB A:ASN231 4.6 17.5 1.0
O A:PRO190 4.6 15.4 1.0
CB A:ARG200 4.7 20.1 1.0
N A:THR191 4.7 16.9 1.0
N A:MET193 4.8 16.3 1.0
CG2 A:THR192 4.8 16.3 1.0
CD1 A:PHE230 4.8 20.8 1.0
C A:ASN231 4.9 17.8 1.0
N A:TRP232 5.0 17.7 1.0

Chlorine binding site 2 out of 6 in 5a94

Go back to Chlorine Binding Sites List in 5a94
Chlorine binding site 2 out of 6 in the Crystal Structure of Beta-Glucanase SDGLUC5_26A From Saccharophagus Degradans in Complex with Tetrasaccharide A, Form 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Beta-Glucanase SDGLUC5_26A From Saccharophagus Degradans in Complex with Tetrasaccharide A, Form 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl403

b:21.2
occ:1.00
O B:HOH2154 3.0 20.1 1.0
NE B:ARG200 3.1 21.7 1.0
O B:HOH2142 3.1 26.9 1.0
N B:ASN231 3.2 16.3 1.0
N B:THR192 3.4 18.6 1.0
NH2 B:ARG200 3.6 21.9 1.0
CB B:PHE230 3.7 17.9 1.0
OG1 B:THR192 3.8 18.3 1.0
CA B:THR191 3.8 17.9 1.0
OG1 B:THR191 3.8 18.5 1.0
CZ B:ARG200 3.8 22.0 1.0
CA B:ASN231 3.8 16.4 1.0
CD B:ARG200 4.0 21.2 1.0
C B:THR191 4.1 18.9 1.0
CB B:THR191 4.3 18.8 1.0
C B:PHE230 4.3 16.8 1.0
CA B:PHE230 4.4 17.2 1.0
CA B:THR192 4.5 18.6 1.0
CG B:PHE230 4.5 19.1 1.0
CB B:THR192 4.5 18.4 1.0
CB B:ASN231 4.7 16.9 1.0
N B:MET193 4.7 18.9 1.0
CB B:ARG200 4.7 20.9 1.0
O B:PRO190 4.8 18.8 1.0
CG2 B:THR192 4.8 17.6 1.0
N B:THR191 4.8 18.2 1.0
CD1 B:PHE230 5.0 20.4 1.0

Chlorine binding site 3 out of 6 in 5a94

Go back to Chlorine Binding Sites List in 5a94
Chlorine binding site 3 out of 6 in the Crystal Structure of Beta-Glucanase SDGLUC5_26A From Saccharophagus Degradans in Complex with Tetrasaccharide A, Form 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Beta-Glucanase SDGLUC5_26A From Saccharophagus Degradans in Complex with Tetrasaccharide A, Form 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl403

b:23.4
occ:1.00
O C:HOH2143 3.1 20.9 1.0
O C:HOH2149 3.2 26.0 1.0
NE C:ARG200 3.2 21.9 1.0
N C:ASN231 3.2 18.5 1.0
N C:THR192 3.3 16.4 1.0
CA C:THR191 3.6 16.4 1.0
OG1 C:THR191 3.6 16.4 1.0
NH2 C:ARG200 3.7 21.8 1.0
OG1 C:THR192 3.8 17.3 1.0
CB C:PHE230 3.8 20.0 1.0
CA C:ASN231 3.8 18.6 1.0
CZ C:ARG200 3.9 22.2 1.0
C C:THR191 3.9 16.8 1.0
CB C:THR191 4.1 16.5 1.0
CD C:ARG200 4.2 21.8 1.0
C C:PHE230 4.3 19.3 1.0
CA C:THR192 4.4 16.9 1.0
CA C:PHE230 4.4 19.4 1.0
CG C:PHE230 4.5 20.3 1.0
CB C:THR192 4.5 16.5 1.0
N C:MET193 4.6 17.7 1.0
O C:PRO190 4.7 15.9 1.0
CB C:ASN231 4.7 18.8 1.0
N C:THR191 4.7 16.1 1.0
CG2 C:THR192 4.8 16.3 1.0
CB C:ARG200 4.8 21.1 1.0
C C:THR192 5.0 17.2 1.0
CD1 C:PHE230 5.0 19.7 1.0
C C:ASN231 5.0 18.1 1.0
N C:TRP232 5.0 16.8 1.0

Chlorine binding site 4 out of 6 in 5a94

Go back to Chlorine Binding Sites List in 5a94
Chlorine binding site 4 out of 6 in the Crystal Structure of Beta-Glucanase SDGLUC5_26A From Saccharophagus Degradans in Complex with Tetrasaccharide A, Form 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Beta-Glucanase SDGLUC5_26A From Saccharophagus Degradans in Complex with Tetrasaccharide A, Form 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl403

b:22.9
occ:1.00
O D:HOH2121 3.0 24.3 1.0
O D:HOH2108 3.0 17.0 1.0
NE D:ARG200 3.1 23.6 1.0
N D:ASN231 3.3 19.6 1.0
N D:THR192 3.4 16.4 1.0
NH2 D:ARG200 3.5 26.8 1.0
OG1 D:THR192 3.7 17.6 1.0
CA D:THR191 3.7 16.2 1.0
OG1 D:THR191 3.8 17.2 1.0
CZ D:ARG200 3.8 25.4 1.0
CB D:PHE230 3.8 20.9 1.0
CA D:ASN231 3.9 18.7 1.0
CD D:ARG200 4.0 23.6 1.0
C D:THR191 4.1 16.1 1.0
CB D:THR191 4.3 16.2 1.0
C D:PHE230 4.3 19.4 1.0
CA D:THR192 4.4 17.3 1.0
CA D:PHE230 4.5 20.1 1.0
CB D:THR192 4.5 17.0 1.0
CG D:PHE230 4.5 21.9 1.0
N D:MET193 4.7 19.1 1.0
CB D:ASN231 4.7 18.8 1.0
CB D:ARG200 4.7 22.5 1.0
CG2 D:THR192 4.8 17.2 1.0
O D:PRO190 4.8 17.7 1.0
N D:THR191 4.8 16.4 1.0
C D:THR192 4.9 17.8 1.0
CD1 D:PHE230 5.0 21.5 1.0
CG D:ARG200 5.0 22.9 1.0

Chlorine binding site 5 out of 6 in 5a94

Go back to Chlorine Binding Sites List in 5a94
Chlorine binding site 5 out of 6 in the Crystal Structure of Beta-Glucanase SDGLUC5_26A From Saccharophagus Degradans in Complex with Tetrasaccharide A, Form 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Beta-Glucanase SDGLUC5_26A From Saccharophagus Degradans in Complex with Tetrasaccharide A, Form 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl403

b:23.8
occ:1.00
O E:HOH2172 3.1 26.0 1.0
NE E:ARG200 3.2 22.8 1.0
N E:ASN231 3.2 19.0 1.0
O E:HOH2162 3.3 25.1 1.0
N E:THR192 3.4 18.2 1.0
CA E:THR191 3.6 17.9 1.0
OG1 E:THR191 3.7 18.7 1.0
CB E:PHE230 3.7 19.6 1.0
NH2 E:ARG200 3.7 24.7 1.0
CA E:ASN231 3.8 18.5 1.0
OG1 E:THR192 3.8 19.2 1.0
CZ E:ARG200 3.9 24.2 1.0
C E:THR191 4.0 17.9 1.0
CD E:ARG200 4.1 22.9 1.0
CB E:THR191 4.1 17.7 1.0
C E:PHE230 4.2 19.0 1.0
CA E:PHE230 4.3 19.2 1.0
CG E:PHE230 4.4 20.2 1.0
CA E:THR192 4.5 18.4 1.0
CB E:THR192 4.6 18.5 1.0
O E:PRO190 4.6 18.1 1.0
CB E:ASN231 4.7 19.0 1.0
N E:THR191 4.7 17.8 1.0
N E:MET193 4.7 19.4 1.0
CB E:ARG200 4.8 21.5 1.0
CG2 E:THR192 4.8 18.2 1.0
CD1 E:PHE230 4.9 20.9 1.0
N E:TRP232 5.0 17.8 1.0
C E:ASN231 5.0 17.9 1.0

Chlorine binding site 6 out of 6 in 5a94

Go back to Chlorine Binding Sites List in 5a94
Chlorine binding site 6 out of 6 in the Crystal Structure of Beta-Glucanase SDGLUC5_26A From Saccharophagus Degradans in Complex with Tetrasaccharide A, Form 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Beta-Glucanase SDGLUC5_26A From Saccharophagus Degradans in Complex with Tetrasaccharide A, Form 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl403

b:24.9
occ:1.00
O F:HOH2118 3.0 27.1 1.0
O F:HOH2122 3.1 23.7 1.0
NE F:ARG200 3.2 23.9 1.0
N F:ASN231 3.2 19.3 1.0
N F:THR192 3.3 20.4 1.0
CA F:THR191 3.6 19.9 1.0
OG1 F:THR191 3.6 19.6 1.0
NH2 F:ARG200 3.7 25.2 1.0
OG1 F:THR192 3.7 20.3 1.0
CA F:ASN231 3.8 18.7 1.0
CB F:PHE230 3.8 19.7 1.0
CZ F:ARG200 3.9 24.7 1.0
C F:THR191 3.9 20.2 1.0
CB F:THR191 4.1 19.8 1.0
CD F:ARG200 4.2 23.8 1.0
C F:PHE230 4.3 19.7 1.0
CA F:THR192 4.4 20.7 1.0
CA F:PHE230 4.5 19.1 1.0
CB F:THR192 4.5 20.1 1.0
N F:MET193 4.6 21.5 1.0
CG F:PHE230 4.6 20.0 1.0
O F:PRO190 4.7 21.5 1.0
CB F:ASN231 4.7 19.1 1.0
N F:THR191 4.7 20.7 1.0
CG2 F:THR192 4.8 20.1 1.0
CB F:ARG200 4.8 22.8 1.0
C F:THR192 4.9 20.9 1.0
N F:TRP232 5.0 18.5 1.0
C F:ASN231 5.0 19.1 1.0

Reference:

M.Lafond, G.Sulzenbacher, T.Freyd, B.Henrissat, J.G.Berrin, M.L.Garron. The Quaternary Structure of A Glycoside Hydrolase Dictates Specificity Towards Beta-Glucans J.Biol.Chem. V. 291 7183 2016.
ISSN: ISSN 0021-9258
PubMed: 26755730
DOI: 10.1074/JBC.M115.695999
Page generated: Fri Jul 26 05:01:23 2024

Last articles

Cl in 3VEC
Cl in 3VEF
Cl in 3VEE
Cl in 3VDQ
Cl in 3VDR
Cl in 3VDH
Cl in 3VCN
Cl in 3VDG
Cl in 3VCD
Cl in 3VBP
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy