Chlorine in PDB 5ach: X-Ray Structure of Lpmo

The structure of X-Ray Structure of Lpmo, PDB code: 5ach was solved by K.E.H.Frandsen, J.N.Poulsen, M.Tovborg, K.S.Johansen, L.Lo Leggio, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.57 / 1.28
Space group	P 41 3 2
Cell size a, b, c (Å), α, β, γ (°)	124.700, 124.700, 124.700, 90.00, 90.00, 90.00
R / Rfree (%)	11.8 / 14.7

The structure of X-Ray Structure of Lpmo also contains other interesting chemical elements:

Copper

(Cu)

1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Chlorine atom in the X-Ray Structure of Lpmo (pdb code 5ach). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 16 binding sites of Chlorine where determined in the X-Ray Structure of Lpmo, PDB code: 5ach:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 16 in the X-Ray Structure of Lpmo


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Structure of Lpmo within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl501 b:29.5 occ:0.50 O A:HOH2004 1.9 24.5 0.5 NE2 A:HIS147 3.1 16.6 1.0 O A:HOH2005 3.1 52.5 1.0 NE2 A:GLN162 3.2 16.6 1.0 O A:HOH2058 3.5 50.9 1.0 OE1 A:GLN162 3.6 15.9 1.0 O A:HOH2140 3.8 23.9 0.5 CD A:GLN162 3.8 13.0 1.0 CE1 A:HIS78 3.9 14.5 1.0 CU A:CU301 3.9 12.4 0.9 CE1 A:HIS147 4.0 15.9 1.0 CD2 A:HIS147 4.0 18.8 1.0 NE2 A:HIS78 4.1 13.3 1.0 CE1 A:HIC1 4.1 13.7 1.0 CL A:CL515 4.2 38.8 0.5 ND1 A:HIC1 4.4 12.9 1.0 O A:HOH2288 4.5 38.3 1.0 OE2 A:GLU148 4.5 25.1 1.0 CD A:GLU148 4.8 16.5 1.0 ND1 A:HIS78 4.9 13.6 1.0

Chlorine binding site 2 out of 16 in the X-Ray Structure of Lpmo


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of X-Ray Structure of Lpmo within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl502 b:19.6 occ:0.90 O A:HOH2164 3.0 28.7 1.0 N A:LYS32 3.1 9.0 1.0 O A:HOH2151 3.3 46.8 1.0 N A:ASN33 3.3 10.2 1.0 O A:HOH2173 3.3 48.0 1.0 O A:HOH2056 3.4 40.9 1.0 CB A:ASN33 3.7 11.2 1.0 CA A:LYS32 3.9 10.2 0.5 CA A:LYS32 3.9 9.7 0.5 CA A:VAL31 3.9 10.1 1.0 C A:VAL31 4.0 9.5 1.0 C A:LYS32 4.1 10.6 1.0 CG1 A:VAL31 4.1 12.4 1.0 CB A:LYS32 4.2 12.8 0.5 CA A:ASN33 4.2 10.9 1.0 CB A:LYS32 4.3 9.9 0.5 O A:HOH2150 4.3 25.1 1.0 OH A:TYR153 4.6 18.3 1.0 CB A:VAL31 4.6 11.0 1.0 O A:PRO30 4.6 11.6 1.0 CZ A:TYR153 4.7 13.4 1.0 O A:HOH2128 4.7 34.5 1.0 CG A:LYS32 4.7 14.4 0.5 O A:HOH2129 4.8 19.8 1.0

Chlorine binding site 3 out of 16 in the X-Ray Structure of Lpmo


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of X-Ray Structure of Lpmo within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl503 b:31.5 occ:1.00 O A:HOH2450 3.2 30.9 1.0 O A:HOH2067 3.3 73.0 1.0 O A:HOH2158 3.4 47.8 1.0 CA A:GLY189 3.6 15.8 1.0 N A:GLY189 3.7 14.4 1.0 CA A:THR35 3.8 14.7 1.0 CG2 A:THR35 3.9 22.1 1.0 CB A:THR35 3.9 17.1 1.0 CB A:PRO188 4.1 13.8 1.0 C A:PRO188 4.1 14.0 1.0 O A:LEU34 4.2 14.0 1.0 O A:HOH2446 4.2 34.6 1.0 O A:HOH2445 4.3 36.5 1.0 O A:PRO188 4.5 17.4 1.0 O A:THR35 4.5 17.1 1.0 C A:THR35 4.6 14.1 1.0 N A:THR35 4.6 12.7 1.0 C A:GLY189 4.7 15.8 1.0 CA A:PRO188 4.7 13.2 1.0 O A:HOH2156 4.7 15.7 1.0 C A:LEU34 4.8 12.2 1.0 CG A:PRO188 4.8 14.7 1.0 O A:GLY189 4.9 20.0 1.0

Chlorine binding site 4 out of 16 in the X-Ray Structure of Lpmo


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of X-Ray Structure of Lpmo within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl504 b:20.5 occ:1.00 OG A:SER225 3.2 22.9 1.0 CA A:GLY224 3.3 15.8 0.5 O A:HOH2504 3.3 48.4 1.0 C A:GLY224 3.6 14.7 0.5 N A:SER225 3.6 15.6 1.0 N A:GLY224 3.7 17.9 0.5 N A:GLY224 3.7 14.0 0.5 CB A:SER126 3.8 12.3 1.0 C A:GLY224 3.8 16.7 0.5 CB A:SER225 3.9 18.7 1.0 CA A:GLY224 4.1 20.0 0.5 O A:SER126 4.2 12.4 1.0 CG2 A:THR59 4.2 11.8 1.0 CG2 A:VAL128 4.3 16.6 1.0 C A:SER126 4.3 11.1 1.0 O A:GLY224 4.3 21.6 0.5 CA A:SER225 4.4 13.4 1.0 O A:GLY224 4.4 25.5 0.5 OG A:SER126 4.6 13.5 1.0 CA A:SER126 4.7 11.6 1.0 C A:GLY223 4.7 16.6 0.5 N A:VAL127 4.7 11.0 1.0 C A:GLY223 4.7 26.5 0.5 C A:VAL127 4.8 11.1 1.0 CA A:VAL127 4.9 11.5 1.0 CA A:GLY223 4.9 27.8 0.5 O A:HOH2505 4.9 56.0 1.0 O A:HOH2361 5.0 19.3 1.0

Chlorine binding site 5 out of 16 in the X-Ray Structure of Lpmo


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of X-Ray Structure of Lpmo within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl505 b:25.3 occ:1.00 O A:HOH2353 3.2 33.7 1.0 N A:GLN228 3.3 15.7 1.0 O A:HOH2350 3.4 24.2 1.0 CA A:ALA121 3.6 14.7 1.0 CB A:ALA121 3.8 15.7 1.0 CA A:ALA227 3.8 14.5 1.0 O A:HOH2509 3.9 38.2 1.0 O A:HOH2507 3.9 58.1 1.0 CB A:GLN228 4.0 14.7 1.0 O A:THR120 4.0 18.2 1.0 C A:ALA227 4.1 15.8 1.0 N A:ALA121 4.1 14.8 1.0 C A:THR120 4.2 17.0 1.0 CA A:GLN228 4.2 15.9 1.0 CB A:ALA227 4.4 20.0 1.0 CG2 A:THR120 4.6 24.4 1.0 C A:ALA121 4.8 14.5 1.0 O A:HOH2170 4.8 42.1 1.0 N A:ALA227 4.9 14.8 1.0

Chlorine binding site 6 out of 16 in the X-Ray Structure of Lpmo


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of X-Ray Structure of Lpmo within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl506 b:12.6 occ:0.50 O A:HOH2119 0.0 12.5 0.5 O A:HOH2050 3.1 14.9 1.0 OD1 A:ASN27 3.2 15.5 1.0 ND2 A:ASN29 3.6 18.8 1.0 O A:HOH2127 3.8 25.2 1.0 CG A:ASN27 4.2 11.2 1.0 ND2 A:ASN27 4.4 8.7 1.0 O A:HOH2118 4.8 12.7 1.0 CG A:ASN29 4.8 14.7 1.0 O A:HOH2120 4.9 15.2 1.0

Chlorine binding site 7 out of 16 in the X-Ray Structure of Lpmo


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of X-Ray Structure of Lpmo within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl507 b:28.3 occ:0.50 CL A:CL507 0.0 28.3 0.5 CL A:CL507 1.9 33.3 0.5 O A:HOH2087 2.1 32.8 0.5 CZ3 A:TRP5 2.2 16.3 0.2 CH2 A:TRP5 2.8 16.5 0.2 O A:HOH2088 3.4 39.5 1.0 CE3 A:TRP5 3.4 13.4 0.2 N A:ARG69 3.4 16.4 1.0 NH1 A:ARG18 3.5 16.1 1.0 NH2 A:ARG18 3.6 17.9 1.0 CA A:THR68 3.9 15.9 1.0 CZ A:ARG18 3.9 14.0 1.0 O A:HOH2021 4.0 25.6 0.8 C A:THR68 4.1 15.5 1.0 CB A:ARG69 4.2 14.4 1.0 CZ2 A:TRP5 4.2 17.1 0.2 O A:HOH2008 4.3 48.7 1.0 CA A:ARG69 4.3 14.5 1.0 CD1 A:TRP5 4.4 16.3 0.8 CB A:THR68 4.4 20.4 1.0 NE1 A:TRP5 4.5 24.0 0.8 CD2 A:TRP5 4.6 14.2 0.2 O A:ASN67 4.7 17.6 1.0 CE2 A:TYR65 4.7 12.1 1.0 CG2 A:THR68 4.8 26.6 1.0 O A:HOH2086 4.8 37.8 1.0 O A:HOH2256 4.9 37.8 1.0 CE2 A:TRP5 4.9 15.2 0.2 CD2 A:TYR65 5.0 11.1 1.0

Chlorine binding site 8 out of 16 in the X-Ray Structure of Lpmo


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of X-Ray Structure of Lpmo within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl507 b:33.3 occ:0.50 CL A:CL507 0.0 33.3 0.5 CL A:CL507 1.9 28.3 0.5 N A:ARG69 3.1 16.4 1.0 O A:HOH2008 3.2 48.7 1.0 O A:HOH2087 3.5 32.8 0.5 CZ3 A:TRP5 3.5 16.3 0.2 CB A:THR68 3.5 20.4 1.0 CA A:THR68 3.6 15.9 1.0 CH2 A:TRP5 3.7 16.5 0.2 C A:THR68 3.9 15.5 1.0 O A:HOH2262 3.9 40.1 1.0 CB A:ARG69 3.9 14.4 1.0 CG2 A:THR68 4.0 26.6 1.0 O A:HOH2088 4.1 39.5 1.0 CA A:ARG69 4.2 14.5 1.0 O A:HOH2021 4.2 25.6 0.8 OG1 A:THR68 4.7 23.2 1.0 CE3 A:TRP5 4.7 13.4 0.2 CZ2 A:TRP5 4.9 17.1 0.2

Chlorine binding site 9 out of 16 in the X-Ray Structure of Lpmo


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of X-Ray Structure of Lpmo within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl508 b:29.3 occ:0.50 O A:HOH2512 0.9 27.7 0.5 N A:ASP231 3.2 14.9 1.0 O A:HOH2513 3.3 27.6 1.0 O A:HOH2053 3.3 23.6 1.0 CA A:GLY230 3.8 16.2 1.0 CB A:ASP231 3.8 16.1 1.0 C A:GLY230 4.0 13.9 1.0 CA A:ASP231 4.1 14.0 1.0 O A:HOH2016 4.2 32.4 1.0 CD1 A:LEU234 4.3 32.5 1.0 O A:HOH2017 4.4 48.9 1.0 O A:HOH2054 4.5 45.1 1.0 O A:ASP231 4.5 16.0 1.0 C A:ASP231 4.7 14.6 1.0 O A:VAL229 4.8 15.2 0.5 O A:VAL229 4.9 15.0 0.5 CZ3 A:TRP8 5.0 13.0 1.0

Chlorine binding site 10 out of 16 in the X-Ray Structure of Lpmo


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of X-Ray Structure of Lpmo within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl509 b:17.1 occ:0.75 O A:HOH2365 1.4 11.6 0.2 O A:SER175 1.7 17.6 0.2 C A:SER175 2.7 18.0 0.2 O A:HOH2420 3.1 27.3 1.0 O A:HOH2426 3.1 60.9 1.0 ND1 A:HIS131 3.2 23.2 1.0 N A:ASP176 3.2 18.1 0.8 CA A:SER175 3.4 17.9 0.2 CG A:ASP176 3.5 20.8 0.2 CG A:ASP176 3.5 21.1 0.8 OD1 A:ASP176 3.6 19.3 0.8 OD1 A:ASP176 3.6 20.0 0.2 CA A:SER175 3.7 17.0 0.8 CE1 A:HIS131 3.7 27.7 1.0 O A:HOH2431 3.7 43.5 1.0 CB A:ASP176 3.8 18.5 0.2 N A:ASP176 3.8 17.8 0.2 OD2 A:ASP176 3.8 21.4 0.8 OD2 A:ASP176 3.8 20.9 0.2 CB A:ASP176 3.9 18.6 0.8 CB A:ALA56 3.9 14.5 1.0 C A:SER175 3.9 14.0 0.8 CA A:ASP176 4.2 20.4 0.8 O A:HOH2221 4.3 21.3 1.0 CA A:ASP176 4.3 19.3 0.2 N A:SER175 4.4 16.0 0.2 CG A:HIS131 4.4 19.0 1.0 OG A:SER175 4.4 17.5 0.2 OG A:SER175 4.4 17.6 0.8 CB A:SER175 4.5 16.2 0.2 N A:SER175 4.5 15.6 0.8 CB A:SER175 4.6 16.0 0.8 O A:SER174 4.7 14.8 1.0 O A:HOH2427 4.8 31.7 1.0 C A:SER174 4.9 16.2 1.0 CB A:HIS131 4.9 17.3 1.0 NE2 A:HIS131 5.0 34.6 1.0

K.E.Frandsen, T.J.Simmons, P.Dupree, J.C.Poulsen, G.R.Hemsworth, L.Ciano, E.M.Johnston, M.Tovborg, K.S.Johansen, P.Von Freiesleben, L.Marmuse, S.Fort, S.Cottaz, H.Driguez, B.Henrissat, N.Lenfant, F.Tuna, A.Baldansuren, G.J.Davies, L.Lo Leggio, P.H.Walton. The Molecular Basis of Polysaccharide Cleavage By Lytic Polysaccharide Monooxygenases. Nat. Chem. Biol. V. 12 298 2016.
ISSN: ESSN 1552-4469
PubMed: 26928935
DOI: 10.1038/NCHEMBIO.2029