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Chlorine in PDB 5auv: Crystal Structure of DAPK1 in Complex with Apigenin.

Enzymatic activity of Crystal Structure of DAPK1 in Complex with Apigenin.

All present enzymatic activity of Crystal Structure of DAPK1 in Complex with Apigenin.:
2.7.11.1;

Protein crystallography data

The structure of Crystal Structure of DAPK1 in Complex with Apigenin., PDB code: 5auv was solved by T.Yokoyama, M.Mizuguchi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.48 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.884, 62.227, 88.446, 90.00, 90.00, 90.00
R / Rfree (%) 17.5 / 19.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of DAPK1 in Complex with Apigenin. (pdb code 5auv). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of DAPK1 in Complex with Apigenin., PDB code: 5auv:

Chlorine binding site 1 out of 1 in 5auv

Go back to Chlorine Binding Sites List in 5auv
Chlorine binding site 1 out of 1 in the Crystal Structure of DAPK1 in Complex with Apigenin.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of DAPK1 in Complex with Apigenin. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:22.4
occ:1.00
NZ A:LYS42 3.2 22.1 1.0
N A:ASP161 3.2 16.2 1.0
O A:HOH574 3.3 19.5 1.0
CA A:ASP161 3.5 16.4 1.0
OAL A:AGI400 3.7 31.9 1.0
CE A:LYS42 3.8 30.2 1.0
CAK A:AGI400 3.8 31.8 1.0
CD1 A:LEU93 3.8 19.3 1.0
CD A:LYS42 3.9 26.7 1.0
CAH A:AGI400 3.9 24.4 1.0
CB A:ILE160 4.1 16.9 1.0
CAS A:AGI400 4.2 31.4 1.0
CB A:ASP161 4.3 19.5 1.0
C A:ILE160 4.4 17.4 1.0
CA A:ILE160 4.6 17.2 1.0
CAF A:AGI400 4.6 24.6 1.0
OE2 A:GLU64 4.7 19.8 1.0
N A:PHE162 4.7 17.3 1.0
C A:ASP161 4.7 19.0 1.0
CD1 A:ILE160 4.7 19.8 1.0
CAQ A:AGI400 4.8 25.9 1.0
CAP A:AGI400 4.9 25.5 1.0
CG1 A:ILE160 4.9 20.7 1.0
CG A:ASP161 4.9 26.1 1.0
CAN A:AGI400 4.9 32.8 1.0
OD1 A:ASP161 4.9 24.6 1.0
CG2 A:ILE160 5.0 18.7 1.0

Reference:

T.Yokoyama, Y.Kosaka, M.Mizuguchi. Structural Insight Into the Interactions Between Death-Associated Protein Kinase 1 and Natural Flavonoids. J.Med.Chem. V. 58 7400 2015.
ISSN: ISSN 0022-2623
PubMed: 26322379
DOI: 10.1021/ACS.JMEDCHEM.5B00893
Page generated: Fri Jul 26 05:25:35 2024

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