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Chlorine in PDB 5ayk: Crystal Structure of ERDJ5 Form I

Protein crystallography data

The structure of Crystal Structure of ERDJ5 Form I, PDB code: 5ayk was solved by S.Watanabe, K.Maegawa, K.Inaba, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.95 / 2.25
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 91.990, 52.970, 92.900, 90.00, 113.54, 90.00
R / Rfree (%) 21.5 / 24.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of ERDJ5 Form I (pdb code 5ayk). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of ERDJ5 Form I, PDB code: 5ayk:

Chlorine binding site 1 out of 1 in 5ayk

Go back to Chlorine Binding Sites List in 5ayk
Chlorine binding site 1 out of 1 in the Crystal Structure of ERDJ5 Form I


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of ERDJ5 Form I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl802

b:77.8
occ:1.00
OG A:SER158 3.3 50.6 1.0
CA A:SER158 4.0 54.2 1.0
CB A:SER158 4.0 51.3 1.0
O A:TYR201 4.2 61.2 1.0
N A:SER159 4.3 59.2 1.0
C A:SER158 4.5 55.4 1.0
N A:HIS160 4.6 69.8 1.0
CB A:HIS160 4.7 71.4 1.0
ND1 A:HIS160 4.7 77.7 1.0
CG A:HIS160 4.7 75.4 1.0
O A:GLY157 4.9 59.6 1.0
CB A:TYR201 5.0 57.6 1.0

Reference:

K.Maegawa, S.Watanabe, M.Okumura, K.Noi, M.Inoue, R.Ushioda, T.Ogura, K.Nagata, K.Inaba. Highly Dynamic Nature of ERDJ5 Is Essential For Enhancement of the Er Associated Degradation To Be Published.
Page generated: Fri Jul 26 05:26:12 2024

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