Chlorine in PDB 5b0y: Crystal Structure of the Nucleosome Containing Histone H3 with the Crotonylated Lysine 122

The structure of Crystal Structure of the Nucleosome Containing Histone H3 with the Crotonylated Lysine 122, PDB code: 5b0y was solved by Y.Suzuki, N.Horikoshi, H.Kurumizaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.82 / 2.56
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	99.635, 108.773, 171.142, 90.00, 90.00, 90.00
R / Rfree (%)	21 / 24.9

The structure of Crystal Structure of the Nucleosome Containing Histone H3 with the Crotonylated Lysine 122 also contains other interesting chemical elements:

Manganese

(Mn)

8 atoms

The binding sites of Chlorine atom in the Crystal Structure of the Nucleosome Containing Histone H3 with the Crotonylated Lysine 122 (pdb code 5b0y). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the Nucleosome Containing Histone H3 with the Crotonylated Lysine 122, PDB code: 5b0y:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of the Nucleosome Containing Histone H3 with the Crotonylated Lysine 122


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Nucleosome Containing Histone H3 with the Crotonylated Lysine 122 within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl301 b:53.8 occ:1.00 N C:GLY46 3.0 34.3 1.0 N D:SER91 3.3 32.8 1.0 CA C:GLY46 3.4 35.9 1.0 N C:ALA47 3.6 34.6 1.0 CB D:THR90 3.7 35.7 1.0 CA C:GLY44 3.7 39.4 1.0 CA D:THR90 3.7 35.6 1.0 C C:GLY44 3.8 39.2 1.0 C C:GLY46 3.9 33.5 1.0 N C:ALA45 3.9 42.0 1.0 C D:THR90 4.0 34.6 1.0 CB D:SER91 4.1 33.3 1.0 OG D:SER91 4.1 36.6 1.0 OP1 J:DT258 4.1 54.0 1.0 C C:ALA45 4.2 35.3 1.0 O C:GLY44 4.3 38.1 1.0 CA D:SER91 4.3 32.1 1.0 CG2 D:THR90 4.4 33.8 1.0 CA C:ALA45 4.6 38.1 1.0 CA C:ALA47 4.7 31.9 1.0 N C:GLY44 4.8 42.3 1.0 OG1 D:THR90 4.8 36.3 1.0 CB C:ALA47 4.9 33.2 1.0 O C:GLY46 4.9 33.0 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of the Nucleosome Containing Histone H3 with the Crotonylated Lysine 122


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Nucleosome Containing Histone H3 with the Crotonylated Lysine 122 within 5.0Å range: probe atom residue distance (Å) B Occ G:Cl201 b:52.4 occ:1.00 N G:GLY46 3.2 30.8 1.0 N H:SER91 3.4 32.2 1.0 CB H:THR90 3.5 28.9 1.0 CA G:GLY44 3.6 39.0 1.0 CA H:THR90 3.6 33.6 1.0 N G:ALA47 3.6 34.3 1.0 N G:ALA45 3.7 42.8 1.0 C G:GLY44 3.7 40.9 1.0 CA G:GLY46 3.7 35.5 1.0 C H:THR90 4.0 32.0 1.0 C G:GLY46 4.0 34.2 1.0 OP1 I:DA111 4.1 58.6 1.0 OG H:SER91 4.1 33.8 1.0 CG2 H:THR90 4.2 26.6 1.0 C G:ALA45 4.3 32.5 1.0 CB H:SER91 4.3 33.0 1.0 O G:GLY44 4.4 39.0 1.0 CA H:SER91 4.5 32.2 1.0 CA G:ALA45 4.6 36.1 1.0 N G:GLY44 4.6 39.7 1.0 CB G:ALA47 4.6 34.7 1.0 CA G:ALA47 4.6 33.0 1.0 OG1 H:THR90 4.7 29.9 1.0 O H:ILE89 4.9 34.4 1.0 N H:THR90 4.9 31.7 1.0

Y.Suzuki, N.Horikoshi, D.Kato, H.Kurumizaka. Crystal Structure of the Nucleosome Containing Histone H3 with Crotonylated Lysine 122 Biochem.Biophys.Res.Commun. V. 469 483 2016.
ISSN: ESSN 1090-2104
PubMed: 26694698
DOI: 10.1016/J.BBRC.2015.12.041