Chlorine in PDB 5b2n: Crystal Structure of the Light-Driven Chloride Ion-Pumping Rhodopsin, Clp, From Nonlabens Marinus

The structure of Crystal Structure of the Light-Driven Chloride Ion-Pumping Rhodopsin, Clp, From Nonlabens Marinus, PDB code: 5b2n was solved by T.Hosaka, T.Kimura-Someya, M.Shirouzu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.38 / 1.58
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	101.580, 49.790, 75.320, 90.00, 130.40, 90.00
R / Rfree (%)	17.6 / 19.8

The binding sites of Chlorine atom in the Crystal Structure of the Light-Driven Chloride Ion-Pumping Rhodopsin, Clp, From Nonlabens Marinus (pdb code 5b2n). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of the Light-Driven Chloride Ion-Pumping Rhodopsin, Clp, From Nonlabens Marinus, PDB code: 5b2n:

Chlorine binding site 1 out of 1 in the Crystal Structure of the Light-Driven Chloride Ion-Pumping Rhodopsin, Clp, From Nonlabens Marinus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Light-Driven Chloride Ion-Pumping Rhodopsin, Clp, From Nonlabens Marinus within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl302 b:43.1 occ:1.00 NZ A:LYS235 3.1 21.3 1.0 O A:HOH436 3.1 17.7 1.0 CD1 A:TRP99 3.5 16.1 1.0 CE A:LYS235 3.6 21.6 1.0 NE1 A:TRP99 3.6 15.4 1.0 OG1 A:THR102 3.8 19.9 1.0 CB A:ALA61 3.9 18.7 1.0 ND2 A:ASN98 4.0 23.8 1.0 C15 A:RET301 4.1 18.9 1.0 CA A:ALA61 4.1 17.0 1.0 C14 A:RET301 4.3 18.4 1.0 CD A:LYS235 4.5 18.7 1.0 CG2 A:THR102 4.5 19.6 1.0 CB A:THR102 4.6 17.9 1.0 CB A:ASN98 4.7 19.8 1.0 OD1 A:ASP231 4.8 19.4 1.0 CG A:TRP99 4.8 15.4 1.0 O A:ARG95 4.9 16.9 1.0 CG A:ASN98 4.9 25.1 1.0 CE2 A:TRP99 5.0 15.5 1.0 N A:ALA61 5.0 17.7 1.0

T.Hosaka, S.Yoshizawa, Y.Nakajima, N.Ohsawa, M.Hato, E.F.Delong, K.Kogure, S.Yokoyama, T.Kimura-Someya, W.Iwasaki, M.Shirouzu. Structural Mechanism For Light-Driven Transport By A New Type of Chloride Ion Pump, Nonlabens Marinus Rhodopsin-3 J.Biol.Chem. V. 291 17488 2016.
ISSN: ESSN 1083-351X
PubMed: 27365396
DOI: 10.1074/JBC.M116.728220