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Chlorine in PDB 5b4v: Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and An Inhibitor Methylmalonate

Enzymatic activity of Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and An Inhibitor Methylmalonate

All present enzymatic activity of Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and An Inhibitor Methylmalonate:
1.1.1.30;

Protein crystallography data

The structure of Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and An Inhibitor Methylmalonate, PDB code: 5b4v was solved by H.Kanazawa, M.Tsunoda, M.M.Hoque, K.Suzuki, T.Yamamoto, A.Takenaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.03 / 1.50
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 62.770, 62.770, 119.310, 90.00, 90.00, 90.00
R / Rfree (%) 14 / 16.3

Other elements in 5b4v:

The structure of Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and An Inhibitor Methylmalonate also contains other interesting chemical elements:

Sodium (Na) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and An Inhibitor Methylmalonate (pdb code 5b4v). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and An Inhibitor Methylmalonate, PDB code: 5b4v:

Chlorine binding site 1 out of 1 in 5b4v

Go back to Chlorine Binding Sites List in 5b4v
Chlorine binding site 1 out of 1 in the Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and An Inhibitor Methylmalonate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and An Inhibitor Methylmalonate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:14.2
occ:1.00
 O A:HOH575 3.2 24.9 1.0
NZ A:LYS219 3.2 14.6 1.0
N A:VAL150 3.3 7.8 1.0
CA A:SER149 3.5 9.3 1.0
CB A:SER149 3.8 9.7 1.0
C A:SER149 3.9 7.8 1.0
CE A:LYS219 4.0 13.4 1.0
CG1 A:VAL150 4.0 9.2 1.0
CG2 A:VAL150 4.0 9.5 1.0
OG A:SER149 4.1 11.2 1.0
CB A:VAL150 4.3 9.0 1.0
CA A:VAL150 4.4 8.7 1.0
OE2 A:GLU218 4.5 25.1 0.5
O A:ALA148 4.7 9.0 1.0
N A:SER149 4.8 8.1 1.0
O A:HOH475 4.9 15.3 1.0
O A:HOH545 5.0 24.1 1.0

Reference:

H.Kanazawa, M.M.Hoque, M.Tsunoda, K.Suzuki, T.Yamamoto, G.Kawai, J.Kondo, A.Takenaka. Structural Insights Into the Catalytic Reaction Trigger and Inhibition of D-3-Hydroxybutyrate Dehydrogenase Acta Crystallogr.,Sect.F V. 72 507 2016.
ISSN: ESSN 2053-230X
PubMed: 27380367
DOI: 10.1107/S2053230X16007767
Page generated: Sat Dec 12 11:31:54 2020

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