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Chlorine in PDB 5b5u: Crystal Structure of Truncated Pyrococcus Furiosus L-Asparaginase with Peptide

Enzymatic activity of Crystal Structure of Truncated Pyrococcus Furiosus L-Asparaginase with Peptide

All present enzymatic activity of Crystal Structure of Truncated Pyrococcus Furiosus L-Asparaginase with Peptide:
3.5.1.1;

Protein crystallography data

The structure of Crystal Structure of Truncated Pyrococcus Furiosus L-Asparaginase with Peptide, PDB code: 5b5u was solved by P.Sharma, R.Tomar, S.K.Nath, B.Kundu, Ashish, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 60.37 / 2.61
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 91.310, 91.310, 186.971, 90.00, 90.00, 120.00
R / Rfree (%) 20.3 / 24.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Truncated Pyrococcus Furiosus L-Asparaginase with Peptide (pdb code 5b5u). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Truncated Pyrococcus Furiosus L-Asparaginase with Peptide, PDB code: 5b5u:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5b5u

Go back to Chlorine Binding Sites List in 5b5u
Chlorine binding site 1 out of 2 in the Crystal Structure of Truncated Pyrococcus Furiosus L-Asparaginase with Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Truncated Pyrococcus Furiosus L-Asparaginase with Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:55.5
occ:1.00
CB A:MET110 3.8 37.4 1.0
O A:MET158 3.9 46.7 1.0
CG1 A:ILE111 4.0 40.9 1.0
C A:MET158 4.0 42.9 1.0
C A:SER159 4.0 34.5 1.0
CA A:SER159 4.1 37.6 1.0
N A:SER159 4.1 38.6 1.0
N A:ARG160 4.2 37.0 1.0
CD1 A:ILE111 4.3 45.3 1.0
CE A:MET110 4.3 41.1 1.0
O A:SER159 4.4 38.0 1.0
CG A:MET110 4.6 42.9 1.0
CG A:ARG160 4.6 42.7 1.0
CA A:MET158 4.8 39.8 1.0
C A:MET110 4.8 41.3 1.0
CA A:ARG160 4.9 39.7 1.0
O A:MET110 4.9 37.5 1.0
O A:HOH308 5.0 33.9 1.0
CA A:MET110 5.0 38.5 1.0

Chlorine binding site 2 out of 2 in 5b5u

Go back to Chlorine Binding Sites List in 5b5u
Chlorine binding site 2 out of 2 in the Crystal Structure of Truncated Pyrococcus Furiosus L-Asparaginase with Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Truncated Pyrococcus Furiosus L-Asparaginase with Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl401

b:56.5
occ:1.00
O B:LEU222 4.3 46.3 1.0
CE1 B:TYR224 4.3 44.9 1.0
CB B:ALA201 4.3 50.8 1.0
CZ B:TYR224 4.4 45.3 1.0
OH B:TYR224 4.6 48.0 1.0
CD1 B:TYR224 4.7 40.0 1.0
CE2 B:TYR224 4.8 43.6 1.0

Reference:

P.Sharma, R.Tomar, S.K.Nath, B.Kundu, Ashish. Crystal Structure of Truncated Pyrococcus Furiosus L-Asparaginase with Peptide To Be Published.
Page generated: Sat Dec 12 11:31:57 2020

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