Chlorine in PDB 5bpm: Crystal Structure of Unhydrolyzed Atp Bound Human HSP70 Nbd Double Mutant E268Q+R272K.
Protein crystallography data
The structure of Crystal Structure of Unhydrolyzed Atp Bound Human HSP70 Nbd Double Mutant E268Q+R272K., PDB code: 5bpm
was solved by
D.Narayanan,
R.A.Engh,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.08 /
1.83
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
46.466,
64.278,
144.860,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
17.1 /
22.8
|
Other elements in 5bpm:
The structure of Crystal Structure of Unhydrolyzed Atp Bound Human HSP70 Nbd Double Mutant E268Q+R272K. also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Unhydrolyzed Atp Bound Human HSP70 Nbd Double Mutant E268Q+R272K.
(pdb code 5bpm). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the
Crystal Structure of Unhydrolyzed Atp Bound Human HSP70 Nbd Double Mutant E268Q+R272K., PDB code: 5bpm:
Jump to Chlorine binding site number:
1;
2;
Chlorine binding site 1 out
of 2 in 5bpm
Go back to
Chlorine Binding Sites List in 5bpm
Chlorine binding site 1 out
of 2 in the Crystal Structure of Unhydrolyzed Atp Bound Human HSP70 Nbd Double Mutant E268Q+R272K.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Unhydrolyzed Atp Bound Human HSP70 Nbd Double Mutant E268Q+R272K. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl402
b:21.1
occ:1.00
|
HZ2
|
A:LYS126
|
2.4
|
27.4
|
1.0
|
H
|
A:ASP32
|
2.5
|
25.7
|
1.0
|
HB2
|
A:ASN31
|
2.6
|
20.7
|
1.0
|
HE22
|
A:GLN33
|
2.7
|
22.9
|
1.0
|
HB2
|
A:ASP32
|
2.9
|
17.6
|
1.0
|
HD2
|
A:LYS126
|
2.9
|
30.9
|
1.0
|
O
|
A:HOH763
|
3.1
|
14.9
|
1.0
|
NZ
|
A:LYS126
|
3.2
|
22.8
|
1.0
|
N
|
A:ASP32
|
3.3
|
21.4
|
1.0
|
NE2
|
A:GLN33
|
3.5
|
19.1
|
1.0
|
HZ3
|
A:LYS126
|
3.5
|
27.4
|
1.0
|
CB
|
A:ASN31
|
3.5
|
17.3
|
1.0
|
CB
|
A:ASP32
|
3.6
|
14.7
|
1.0
|
HD11
|
A:ILE130
|
3.7
|
24.7
|
1.0
|
HG12
|
A:ILE130
|
3.7
|
26.8
|
1.0
|
HZ1
|
A:LYS126
|
3.7
|
27.4
|
1.0
|
CD
|
A:LYS126
|
3.8
|
25.7
|
1.0
|
CG
|
A:ASP32
|
3.8
|
36.3
|
1.0
|
O
|
A:HOH731
|
3.8
|
42.0
|
1.0
|
CE
|
A:LYS126
|
3.9
|
24.8
|
1.0
|
CG
|
A:ASN31
|
3.9
|
22.4
|
1.0
|
HE3
|
A:LYS126
|
3.9
|
29.8
|
1.0
|
HE21
|
A:GLN33
|
4.0
|
22.9
|
1.0
|
CA
|
A:ASP32
|
4.1
|
15.8
|
1.0
|
O
|
A:HOH632
|
4.1
|
30.3
|
1.0
|
OE1
|
A:GLN33
|
4.1
|
27.7
|
1.0
|
H
|
A:GLN33
|
4.1
|
20.2
|
1.0
|
O
|
A:HOH725
|
4.1
|
16.1
|
1.0
|
HB3
|
A:ASN31
|
4.1
|
20.7
|
1.0
|
HD3
|
A:LYS126
|
4.2
|
30.9
|
1.0
|
HD22
|
A:ASN31
|
4.2
|
26.0
|
1.0
|
HG13
|
A:ILE130
|
4.2
|
26.8
|
1.0
|
OD1
|
A:ASP32
|
4.2
|
33.8
|
1.0
|
CD
|
A:GLN33
|
4.2
|
27.0
|
1.0
|
OD2
|
A:ASP32
|
4.2
|
37.6
|
1.0
|
ND2
|
A:ASN31
|
4.2
|
21.6
|
1.0
|
CG1
|
A:ILE130
|
4.3
|
22.3
|
1.0
|
C
|
A:ASN31
|
4.3
|
21.2
|
1.0
|
CA
|
A:ASN31
|
4.3
|
17.0
|
1.0
|
CD1
|
A:ILE130
|
4.4
|
20.6
|
1.0
|
HA
|
A:ASN31
|
4.4
|
20.4
|
1.0
|
OD1
|
A:ASN31
|
4.4
|
14.8
|
1.0
|
HB3
|
A:ASP32
|
4.4
|
17.6
|
1.0
|
HD21
|
A:ASN31
|
4.7
|
26.0
|
1.0
|
HD13
|
A:ILE130
|
4.8
|
24.7
|
1.0
|
N
|
A:GLN33
|
4.8
|
16.8
|
1.0
|
HE2
|
A:LYS126
|
4.8
|
29.8
|
1.0
|
HA
|
A:ASP32
|
4.8
|
19.0
|
1.0
|
O
|
A:HOH661
|
4.8
|
24.6
|
1.0
|
C
|
A:ASP32
|
4.9
|
23.8
|
1.0
|
CG
|
A:LYS126
|
4.9
|
22.4
|
1.0
|
HB2
|
A:ASP53
|
5.0
|
23.9
|
1.0
|
HG2
|
A:LYS126
|
5.0
|
26.8
|
1.0
|
|
Chlorine binding site 2 out
of 2 in 5bpm
Go back to
Chlorine Binding Sites List in 5bpm
Chlorine binding site 2 out
of 2 in the Crystal Structure of Unhydrolyzed Atp Bound Human HSP70 Nbd Double Mutant E268Q+R272K.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Unhydrolyzed Atp Bound Human HSP70 Nbd Double Mutant E268Q+R272K. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl405
b:39.2
occ:1.00
|
H
|
A:ILE51
|
2.6
|
17.4
|
1.0
|
HA
|
A:LEU50
|
3.2
|
21.8
|
1.0
|
O
|
A:HOH863
|
3.2
|
38.0
|
1.0
|
HZ1
|
A:LYS126
|
3.3
|
27.4
|
1.0
|
HB3
|
A:ALA54
|
3.3
|
19.6
|
1.0
|
N
|
A:ILE51
|
3.4
|
14.5
|
1.0
|
O
|
A:ILE51
|
3.7
|
17.2
|
1.0
|
O
|
A:HOH725
|
3.9
|
16.1
|
1.0
|
HB2
|
A:ALA54
|
4.0
|
19.6
|
1.0
|
HD12
|
A:ILE51
|
4.0
|
36.4
|
1.0
|
HB
|
A:ILE51
|
4.0
|
16.4
|
1.0
|
CB
|
A:ALA54
|
4.0
|
16.3
|
1.0
|
CA
|
A:LEU50
|
4.1
|
18.1
|
1.0
|
NZ
|
A:LYS126
|
4.1
|
22.8
|
1.0
|
HB3
|
A:LEU50
|
4.1
|
19.3
|
1.0
|
HD23
|
A:LEU50
|
4.2
|
25.2
|
1.0
|
HE3
|
A:LYS126
|
4.2
|
29.8
|
1.0
|
HE2
|
A:LYS126
|
4.2
|
29.8
|
1.0
|
C
|
A:LEU50
|
4.2
|
17.4
|
1.0
|
HD22
|
A:LEU50
|
4.3
|
25.2
|
1.0
|
HB1
|
A:ALA54
|
4.3
|
19.6
|
1.0
|
CA
|
A:ILE51
|
4.3
|
12.8
|
1.0
|
CE
|
A:LYS126
|
4.4
|
24.8
|
1.0
|
C
|
A:ILE51
|
4.4
|
17.6
|
1.0
|
O
|
A:ARG49
|
4.6
|
17.9
|
1.0
|
HZ2
|
A:LYS126
|
4.6
|
27.4
|
1.0
|
HZ3
|
A:LYS126
|
4.6
|
27.4
|
1.0
|
CB
|
A:LEU50
|
4.6
|
16.1
|
1.0
|
CB
|
A:ILE51
|
4.6
|
13.7
|
1.0
|
CD2
|
A:LEU50
|
4.7
|
21.0
|
1.0
|
O
|
A:HOH632
|
4.7
|
30.3
|
1.0
|
HD13
|
A:ILE51
|
4.7
|
36.4
|
1.0
|
CD1
|
A:ILE51
|
4.8
|
30.3
|
1.0
|
O
|
A:HOH731
|
4.8
|
42.0
|
1.0
|
H
|
A:ALA54
|
5.0
|
16.6
|
1.0
|
|
Reference:
D.Narayanan,
A.Pflug,
T.Christopeit,
P.Kyomuhendo,
R.A.Engh.
Nucleotide Binding to Variants of the HSP70-Nbd. To Be Published.
Page generated: Fri Jul 26 05:37:03 2024
|