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Chlorine in PDB 5bqf: Probable 2-Hydroxyacid Dehydrogenase From Rhizobium Etli Cfn 42 in Complex with Nadp, Hepes and L(+)-Tartaric Acid

Protein crystallography data

The structure of Probable 2-Hydroxyacid Dehydrogenase From Rhizobium Etli Cfn 42 in Complex with Nadp, Hepes and L(+)-Tartaric Acid, PDB code: 5bqf was solved by K.M.Langner, I.G.Shabalin, K.B.Handing, O.A.Gasiorowska, M.Stead, B.S.Hillerich, S.Chowdhury, J.Hammonds, M.D.Zimmerman, N.Al Obaidi, J.Bonanno, R.Seidel, S.C.Almo, W.Minor, New York Structural Genomicsresearch Consortium (Nysgrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.45
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 65.692, 65.692, 151.406, 90.00, 90.00, 90.00
R / Rfree (%) 13.9 / 16.5

Other elements in 5bqf:

The structure of Probable 2-Hydroxyacid Dehydrogenase From Rhizobium Etli Cfn 42 in Complex with Nadp, Hepes and L(+)-Tartaric Acid also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Probable 2-Hydroxyacid Dehydrogenase From Rhizobium Etli Cfn 42 in Complex with Nadp, Hepes and L(+)-Tartaric Acid (pdb code 5bqf). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Probable 2-Hydroxyacid Dehydrogenase From Rhizobium Etli Cfn 42 in Complex with Nadp, Hepes and L(+)-Tartaric Acid, PDB code: 5bqf:

Chlorine binding site 1 out of 1 in 5bqf

Go back to Chlorine Binding Sites List in 5bqf
Chlorine binding site 1 out of 1 in the Probable 2-Hydroxyacid Dehydrogenase From Rhizobium Etli Cfn 42 in Complex with Nadp, Hepes and L(+)-Tartaric Acid


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Probable 2-Hydroxyacid Dehydrogenase From Rhizobium Etli Cfn 42 in Complex with Nadp, Hepes and L(+)-Tartaric Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl406

b:24.9
occ:0.80
O A:HOH860 3.1 23.9 1.0
OG1 A:THR241 3.4 26.8 1.0
CG A:PRO270 3.7 18.8 1.0
CB A:THR241 3.8 21.6 1.0
CA A:THR241 3.9 19.8 1.0
CD A:PRO270 4.0 18.3 1.0
CG2 A:VAL244 4.0 20.3 1.0
CB A:VAL244 4.2 18.3 1.0
CG1 A:VAL244 4.3 19.8 1.0
N A:THR241 4.7 17.8 1.0
CB A:PRO270 4.7 19.5 1.0
NA A:NA405 4.7 22.6 0.8
O A:THR241 4.8 17.6 1.0
O A:HOH907 4.8 23.9 1.0
C A:THR241 4.9 17.8 1.0
O A:GLU240 5.0 19.0 1.0

Reference:

K.M.Langner, I.G.Shabalin, K.B.Handing, O.A.Gasiorowska, S.Chowdhury, M.D.Zimmerman, W.Minor. Probable 2-Hydroxyacid Dehydrogenase From Rhizobium Etli Cfn 42 in Complex with Nadp, Hepes and L-Tartaric Acid To Be Published.
Page generated: Sat Dec 12 11:32:44 2020

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