Chlorine in PDB 5bse: Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR)
Enzymatic activity of Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR)
All present enzymatic activity of Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR):
1.5.1.2;
Protein crystallography data
The structure of Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR), PDB code: 5bse
was solved by
M.Ruszkowski,
B.Nocek,
G.Forlani,
Z.Dauter,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
38.93 /
1.70
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
86.800,
100.600,
101.200,
67.90,
85.30,
89.30
|
R / Rfree (%)
|
16 /
18
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR)
(pdb code 5bse). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 10 binding sites of Chlorine where determined in the
Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR), PDB code: 5bse:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Chlorine binding site 1 out
of 10 in 5bse
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Chlorine Binding Sites List in 5bse
Chlorine binding site 1 out
of 10 in the Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl302
b:42.5
occ:0.80
|
OG
|
A:SER238
|
2.9
|
42.0
|
0.5
|
O
|
A:HOH422
|
2.9
|
33.3
|
1.0
|
OG1
|
A:THR243
|
3.0
|
34.5
|
1.0
|
O
|
A:HOH522
|
3.3
|
36.9
|
1.0
|
N
|
A:THR243
|
3.4
|
31.3
|
1.0
|
CB
|
A:THR243
|
3.5
|
33.4
|
1.0
|
CB
|
A:SER238
|
3.6
|
42.8
|
0.5
|
N
|
A:SER238
|
3.6
|
39.2
|
0.5
|
N
|
A:SER238
|
3.6
|
38.9
|
0.5
|
N
|
A:THR242
|
3.6
|
32.8
|
1.0
|
O
|
A:VAL236
|
3.7
|
39.2
|
1.0
|
CB
|
A:SER238
|
3.7
|
41.4
|
0.5
|
OG1
|
A:THR242
|
3.8
|
35.0
|
1.0
|
OG
|
A:SER238
|
3.8
|
47.4
|
0.5
|
CA
|
A:THR243
|
4.1
|
31.4
|
1.0
|
C
|
A:GLY241
|
4.1
|
34.4
|
1.0
|
CA
|
A:GLY241
|
4.1
|
36.9
|
1.0
|
CA
|
A:SER238
|
4.1
|
41.4
|
0.5
|
CA
|
A:SER238
|
4.2
|
40.8
|
0.5
|
C
|
A:THR242
|
4.4
|
32.7
|
1.0
|
CA
|
A:THR242
|
4.4
|
32.4
|
1.0
|
O
|
A:SER238
|
4.5
|
38.5
|
0.5
|
O
|
A:SER238
|
4.5
|
38.6
|
0.5
|
C
|
A:THR237
|
4.6
|
40.5
|
1.0
|
O
|
B:HOH535
|
4.7
|
61.0
|
1.0
|
CA
|
A:THR237
|
4.7
|
35.8
|
1.0
|
CB
|
A:THR242
|
4.7
|
33.4
|
1.0
|
C
|
A:SER238
|
4.8
|
39.7
|
0.5
|
C
|
A:SER238
|
4.8
|
39.9
|
0.5
|
C
|
A:VAL236
|
4.8
|
37.5
|
1.0
|
CG2
|
A:THR243
|
4.8
|
32.9
|
1.0
|
N
|
A:ILE244
|
4.9
|
30.6
|
1.0
|
O
|
A:GLY241
|
5.0
|
33.1
|
1.0
|
|
Chlorine binding site 2 out
of 10 in 5bse
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Chlorine Binding Sites List in 5bse
Chlorine binding site 2 out
of 10 in the Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl301
b:38.0
occ:0.80
|
O
|
B:HOH440
|
2.8
|
31.9
|
1.0
|
OG1
|
B:THR243
|
3.1
|
32.0
|
1.0
|
O
|
B:HOH490
|
3.2
|
33.5
|
1.0
|
N
|
B:THR243
|
3.4
|
29.6
|
1.0
|
C7
|
A:MPO301
|
3.5
|
48.5
|
0.7
|
N1
|
A:MPO301
|
3.5
|
43.7
|
0.7
|
CB
|
B:THR243
|
3.5
|
30.8
|
1.0
|
N
|
B:THR242
|
3.6
|
31.1
|
1.0
|
CB
|
B:SER238
|
3.7
|
41.8
|
1.0
|
N
|
B:SER238
|
3.7
|
33.2
|
1.0
|
O
|
B:VAL236
|
3.7
|
33.2
|
1.0
|
OG1
|
B:THR242
|
3.8
|
34.8
|
1.0
|
C3
|
A:MPO301
|
3.8
|
49.3
|
0.7
|
OG
|
B:SER238
|
3.8
|
55.4
|
1.0
|
C6
|
A:MPO301
|
3.9
|
42.1
|
0.7
|
CA
|
B:GLY241
|
4.0
|
32.9
|
1.0
|
CA
|
B:THR243
|
4.1
|
28.9
|
1.0
|
C
|
B:GLY241
|
4.1
|
31.7
|
1.0
|
C2
|
A:MPO301
|
4.2
|
48.5
|
0.7
|
CA
|
B:SER238
|
4.3
|
35.6
|
1.0
|
C
|
B:THR242
|
4.3
|
30.6
|
1.0
|
CA
|
B:THR242
|
4.4
|
31.4
|
1.0
|
O
|
B:SER238
|
4.5
|
33.3
|
1.0
|
C1
|
A:MPO301
|
4.6
|
55.8
|
0.7
|
CB
|
B:THR242
|
4.7
|
33.2
|
1.0
|
C
|
B:THR237
|
4.7
|
32.5
|
1.0
|
C4
|
A:MPO301
|
4.8
|
44.9
|
0.7
|
O
|
A:HOH578
|
4.8
|
48.1
|
1.0
|
CA
|
B:THR237
|
4.8
|
32.3
|
1.0
|
C
|
B:SER238
|
4.8
|
33.5
|
1.0
|
CG2
|
B:THR243
|
4.9
|
30.9
|
1.0
|
N
|
B:ILE244
|
4.9
|
30.2
|
1.0
|
C
|
B:VAL236
|
4.9
|
33.0
|
1.0
|
O
|
B:GLY241
|
5.0
|
31.5
|
1.0
|
N
|
B:GLY241
|
5.0
|
33.3
|
1.0
|
|
Chlorine binding site 3 out
of 10 in 5bse
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Chlorine Binding Sites List in 5bse
Chlorine binding site 3 out
of 10 in the Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl302
b:45.5
occ:0.80
|
O
|
C:HOH455
|
2.9
|
68.7
|
1.0
|
O
|
C:HOH428
|
2.9
|
34.2
|
1.0
|
OG
|
C:SER238
|
3.0
|
49.5
|
1.0
|
OG1
|
C:THR243
|
3.1
|
34.9
|
1.0
|
O
|
C:HOH489
|
3.1
|
35.8
|
1.0
|
N
|
C:THR243
|
3.3
|
32.5
|
1.0
|
CB
|
C:THR243
|
3.5
|
33.6
|
1.0
|
N
|
C:THR242
|
3.6
|
33.0
|
1.0
|
OG1
|
C:THR242
|
3.6
|
40.8
|
1.0
|
O
|
C:VAL236
|
3.9
|
38.3
|
1.0
|
N
|
C:SER238
|
3.9
|
36.4
|
1.0
|
CB
|
C:SER238
|
3.9
|
41.8
|
1.0
|
CA
|
C:GLY241
|
4.0
|
34.1
|
1.0
|
CA
|
C:THR243
|
4.0
|
32.6
|
1.0
|
C
|
C:GLY241
|
4.1
|
33.2
|
1.0
|
C
|
C:THR242
|
4.3
|
32.7
|
1.0
|
CA
|
C:THR242
|
4.3
|
32.1
|
1.0
|
CA
|
C:SER238
|
4.4
|
38.3
|
1.0
|
CB
|
C:THR242
|
4.6
|
35.2
|
1.0
|
O
|
C:SER238
|
4.6
|
37.1
|
1.0
|
O
|
D:HOH489
|
4.6
|
64.7
|
1.0
|
CG2
|
C:THR243
|
4.8
|
34.8
|
1.0
|
C
|
C:THR237
|
4.8
|
35.5
|
1.0
|
O
|
C:HOH522
|
4.9
|
50.5
|
1.0
|
N
|
C:ILE244
|
4.9
|
31.1
|
1.0
|
C
|
C:SER238
|
4.9
|
38.1
|
1.0
|
O
|
C:GLY241
|
4.9
|
34.0
|
1.0
|
CA
|
C:THR237
|
5.0
|
33.6
|
1.0
|
C
|
C:VAL236
|
5.0
|
37.9
|
1.0
|
|
Chlorine binding site 4 out
of 10 in 5bse
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Chlorine Binding Sites List in 5bse
Chlorine binding site 4 out
of 10 in the Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl301
b:42.7
occ:0.80
|
O
|
D:HOH413
|
2.8
|
33.7
|
1.0
|
OG
|
D:SER238
|
2.9
|
41.2
|
0.5
|
OG1
|
D:THR243
|
3.1
|
33.8
|
1.0
|
O
|
D:HOH467
|
3.2
|
37.8
|
1.0
|
N
|
D:THR243
|
3.3
|
30.6
|
1.0
|
CB
|
D:THR243
|
3.5
|
32.7
|
1.0
|
N
|
D:THR242
|
3.6
|
34.0
|
1.0
|
N1
|
C:MPO301
|
3.6
|
51.8
|
0.7
|
C7
|
C:MPO301
|
3.6
|
58.3
|
0.7
|
N
|
D:SER238
|
3.7
|
36.9
|
0.5
|
CB
|
D:SER238
|
3.7
|
43.6
|
0.5
|
N
|
D:SER238
|
3.7
|
36.0
|
0.5
|
O
|
D:VAL236
|
3.7
|
36.1
|
1.0
|
OG1
|
D:THR242
|
3.7
|
40.0
|
1.0
|
OG
|
D:SER238
|
3.9
|
50.5
|
0.5
|
CB
|
D:SER238
|
3.9
|
39.6
|
0.5
|
C6
|
C:MPO301
|
4.0
|
58.5
|
0.7
|
C3
|
C:MPO301
|
4.0
|
67.0
|
0.7
|
CA
|
D:THR243
|
4.0
|
31.4
|
1.0
|
CA
|
D:GLY241
|
4.0
|
36.5
|
1.0
|
C
|
D:GLY241
|
4.1
|
32.9
|
1.0
|
CA
|
D:SER238
|
4.2
|
40.1
|
0.5
|
CA
|
D:SER238
|
4.3
|
38.3
|
0.5
|
C2
|
C:MPO301
|
4.3
|
70.8
|
0.7
|
C
|
D:THR242
|
4.3
|
32.0
|
1.0
|
CA
|
D:THR242
|
4.4
|
32.6
|
1.0
|
O
|
D:SER238
|
4.5
|
37.3
|
0.5
|
O
|
D:SER238
|
4.5
|
37.6
|
0.5
|
CB
|
D:THR242
|
4.6
|
36.2
|
1.0
|
C
|
D:THR237
|
4.7
|
35.5
|
1.0
|
CA
|
D:THR237
|
4.8
|
34.5
|
1.0
|
C
|
D:VAL236
|
4.8
|
35.5
|
1.0
|
C4
|
C:MPO301
|
4.8
|
61.3
|
0.7
|
C
|
D:SER238
|
4.8
|
38.2
|
0.5
|
CG2
|
D:THR243
|
4.8
|
33.4
|
1.0
|
C
|
D:SER238
|
4.8
|
39.2
|
0.5
|
N
|
D:ILE244
|
4.8
|
31.3
|
1.0
|
O4
|
C:MPO301
|
4.9
|
61.6
|
0.7
|
O
|
D:HOH480
|
4.9
|
49.1
|
1.0
|
O
|
D:GLY241
|
5.0
|
33.0
|
1.0
|
C1
|
C:MPO301
|
5.0
|
72.8
|
0.7
|
N
|
D:GLY241
|
5.0
|
34.1
|
1.0
|
C
|
D:THR243
|
5.0
|
31.2
|
1.0
|
|
Chlorine binding site 5 out
of 10 in 5bse
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Chlorine Binding Sites List in 5bse
Chlorine binding site 5 out
of 10 in the Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl301
b:39.4
occ:0.80
|
OG
|
E:SER238
|
2.9
|
49.7
|
1.0
|
O
|
E:HOH415
|
2.9
|
32.5
|
1.0
|
OG1
|
E:THR243
|
3.1
|
32.5
|
1.0
|
O
|
E:HOH517
|
3.2
|
35.9
|
1.0
|
N
|
E:THR243
|
3.3
|
28.8
|
1.0
|
CB
|
E:THR243
|
3.5
|
32.2
|
1.0
|
N
|
E:THR242
|
3.7
|
32.2
|
1.0
|
OG1
|
E:THR242
|
3.7
|
41.1
|
1.0
|
N
|
E:SER238
|
3.7
|
36.3
|
1.0
|
O
|
E:VAL236
|
3.7
|
35.9
|
1.0
|
O
|
E:HOH519
|
3.8
|
56.9
|
1.0
|
CB
|
E:SER238
|
3.8
|
45.4
|
1.0
|
CA
|
E:THR243
|
4.0
|
30.6
|
1.0
|
CA
|
E:GLY241
|
4.1
|
34.5
|
1.0
|
C
|
E:GLY241
|
4.1
|
33.2
|
1.0
|
CA
|
E:SER238
|
4.3
|
39.1
|
1.0
|
C
|
E:THR242
|
4.3
|
31.9
|
1.0
|
CA
|
E:THR242
|
4.4
|
31.8
|
1.0
|
O
|
E:SER238
|
4.5
|
35.5
|
1.0
|
O
|
F:HOH543
|
4.5
|
53.6
|
1.0
|
CB
|
E:THR242
|
4.6
|
36.8
|
1.0
|
C
|
E:THR237
|
4.7
|
37.3
|
1.0
|
CA
|
E:THR237
|
4.8
|
33.8
|
1.0
|
C
|
E:SER238
|
4.8
|
36.5
|
1.0
|
CG2
|
E:THR243
|
4.8
|
32.9
|
1.0
|
C
|
E:VAL236
|
4.9
|
36.0
|
1.0
|
N
|
E:ILE244
|
4.9
|
31.6
|
1.0
|
O
|
E:HOH554
|
4.9
|
47.1
|
1.0
|
O
|
E:GLY241
|
5.0
|
31.7
|
1.0
|
|
Chlorine binding site 6 out
of 10 in 5bse
Go back to
Chlorine Binding Sites List in 5bse
Chlorine binding site 6 out
of 10 in the Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Cl301
b:43.8
occ:0.80
|
O
|
F:HOH423
|
2.8
|
34.0
|
1.0
|
OG
|
F:SER238
|
2.9
|
38.5
|
0.5
|
OG1
|
F:THR243
|
3.1
|
33.6
|
1.0
|
O
|
F:HOH512
|
3.2
|
37.0
|
1.0
|
N
|
F:THR243
|
3.3
|
32.4
|
1.0
|
CB
|
F:THR243
|
3.5
|
32.4
|
1.0
|
N
|
F:THR242
|
3.6
|
31.9
|
1.0
|
OG1
|
F:THR242
|
3.7
|
38.6
|
1.0
|
CB
|
F:SER238
|
3.7
|
40.3
|
0.5
|
O
|
F:VAL236
|
3.8
|
37.8
|
1.0
|
N
|
F:SER238
|
3.9
|
36.6
|
0.5
|
N
|
F:SER238
|
3.9
|
36.2
|
0.5
|
CB
|
F:SER238
|
3.9
|
38.8
|
0.5
|
OG
|
F:SER238
|
4.0
|
45.4
|
0.5
|
CA
|
F:THR243
|
4.0
|
32.5
|
1.0
|
C
|
F:GLY241
|
4.1
|
33.6
|
1.0
|
CA
|
F:GLY241
|
4.1
|
35.5
|
1.0
|
C
|
F:THR242
|
4.3
|
33.0
|
1.0
|
CA
|
F:SER238
|
4.4
|
37.7
|
0.5
|
CA
|
F:THR242
|
4.4
|
31.9
|
1.0
|
CA
|
F:SER238
|
4.4
|
36.9
|
0.5
|
O
|
F:SER238
|
4.5
|
35.2
|
0.5
|
O
|
F:SER238
|
4.5
|
35.2
|
0.5
|
CB
|
F:THR242
|
4.6
|
34.3
|
1.0
|
CG2
|
F:THR243
|
4.8
|
32.3
|
1.0
|
C
|
F:THR237
|
4.8
|
36.4
|
1.0
|
N
|
F:ILE244
|
4.8
|
32.0
|
1.0
|
O
|
E:HOH558
|
4.9
|
59.0
|
1.0
|
C
|
F:SER238
|
4.9
|
36.2
|
0.5
|
C
|
F:SER238
|
4.9
|
36.4
|
0.5
|
C
|
F:VAL236
|
4.9
|
35.5
|
1.0
|
CA
|
F:THR237
|
5.0
|
33.2
|
1.0
|
O
|
F:HOH551
|
5.0
|
48.8
|
1.0
|
O
|
F:GLY241
|
5.0
|
33.2
|
1.0
|
|
Chlorine binding site 7 out
of 10 in 5bse
Go back to
Chlorine Binding Sites List in 5bse
Chlorine binding site 7 out
of 10 in the Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Cl301
b:40.0
occ:0.80
|
O
|
G:HOH418
|
2.8
|
34.1
|
1.0
|
OG1
|
G:THR243
|
3.0
|
32.7
|
1.0
|
O
|
G:HOH461
|
3.2
|
35.5
|
1.0
|
N
|
G:THR243
|
3.4
|
31.0
|
1.0
|
CB
|
G:THR243
|
3.5
|
32.3
|
1.0
|
C7
|
H:MPO301
|
3.6
|
51.7
|
0.7
|
N1
|
H:MPO301
|
3.6
|
50.7
|
0.7
|
CB
|
G:SER238
|
3.6
|
42.9
|
1.0
|
N
|
G:THR242
|
3.6
|
31.8
|
1.0
|
N
|
G:SER238
|
3.7
|
35.4
|
1.0
|
OG1
|
G:THR242
|
3.7
|
35.8
|
1.0
|
O
|
G:VAL236
|
3.7
|
35.6
|
1.0
|
OG
|
G:SER238
|
3.8
|
56.0
|
1.0
|
C6
|
H:MPO301
|
3.9
|
46.7
|
0.7
|
C3
|
H:MPO301
|
3.9
|
55.4
|
0.7
|
CA
|
G:THR243
|
4.0
|
32.3
|
1.0
|
CA
|
G:GLY241
|
4.1
|
33.3
|
1.0
|
C
|
G:GLY241
|
4.1
|
33.6
|
1.0
|
CA
|
G:SER238
|
4.3
|
37.6
|
1.0
|
C2
|
H:MPO301
|
4.3
|
62.6
|
0.7
|
C
|
G:THR242
|
4.4
|
33.0
|
1.0
|
CA
|
G:THR242
|
4.4
|
32.4
|
1.0
|
O
|
G:SER238
|
4.5
|
36.5
|
1.0
|
CB
|
G:THR242
|
4.7
|
36.0
|
1.0
|
C
|
G:THR237
|
4.7
|
34.4
|
1.0
|
C
|
G:SER238
|
4.8
|
37.5
|
1.0
|
C1
|
H:MPO301
|
4.8
|
65.3
|
0.7
|
CG2
|
G:THR243
|
4.8
|
33.0
|
1.0
|
CA
|
G:THR237
|
4.8
|
33.7
|
1.0
|
C4
|
H:MPO301
|
4.8
|
53.6
|
0.7
|
C
|
G:VAL236
|
4.8
|
33.3
|
1.0
|
N
|
G:ILE244
|
4.9
|
29.5
|
1.0
|
O
|
H:HOH540
|
4.9
|
51.0
|
1.0
|
O
|
G:GLY241
|
5.0
|
32.1
|
1.0
|
N
|
G:GLY241
|
5.0
|
35.1
|
1.0
|
|
Chlorine binding site 8 out
of 10 in 5bse
Go back to
Chlorine Binding Sites List in 5bse
Chlorine binding site 8 out
of 10 in the Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Cl302
b:47.9
occ:0.80
|
O
|
H:HOH463
|
2.8
|
36.5
|
1.0
|
OG
|
H:SER238
|
3.0
|
45.8
|
0.5
|
O
|
H:HOH489
|
3.1
|
40.5
|
1.0
|
OG1
|
H:THR243
|
3.1
|
35.8
|
1.0
|
N
|
H:THR243
|
3.3
|
35.1
|
1.0
|
CB
|
H:THR243
|
3.5
|
35.1
|
1.0
|
N
|
H:THR242
|
3.5
|
34.6
|
1.0
|
OG1
|
H:THR242
|
3.6
|
44.5
|
1.0
|
CB
|
H:SER238
|
3.8
|
45.4
|
0.5
|
O
|
H:VAL236
|
3.8
|
40.2
|
1.0
|
N
|
H:SER238
|
3.8
|
39.1
|
0.5
|
N
|
H:SER238
|
3.9
|
38.8
|
0.5
|
OG
|
H:SER238
|
4.0
|
52.7
|
0.5
|
CB
|
H:SER238
|
4.0
|
43.7
|
0.5
|
CA
|
H:THR243
|
4.0
|
33.6
|
1.0
|
C
|
H:GLY241
|
4.0
|
36.7
|
1.0
|
CA
|
H:GLY241
|
4.1
|
38.8
|
1.0
|
C
|
H:THR242
|
4.2
|
37.2
|
1.0
|
CA
|
H:THR242
|
4.3
|
36.0
|
1.0
|
CA
|
H:SER238
|
4.4
|
41.6
|
0.5
|
CA
|
H:SER238
|
4.4
|
40.6
|
0.5
|
O
|
H:SER238
|
4.5
|
38.8
|
0.5
|
CB
|
H:THR242
|
4.6
|
40.1
|
1.0
|
O
|
H:SER238
|
4.6
|
38.8
|
0.5
|
N
|
H:ILE244
|
4.8
|
35.7
|
1.0
|
CG2
|
H:THR243
|
4.8
|
37.6
|
1.0
|
C
|
H:THR237
|
4.8
|
39.7
|
1.0
|
O
|
G:HOH475
|
4.9
|
61.5
|
1.0
|
O
|
H:GLY241
|
4.9
|
35.6
|
1.0
|
O
|
H:HOH528
|
4.9
|
52.7
|
1.0
|
C
|
H:VAL236
|
4.9
|
38.6
|
1.0
|
CA
|
H:THR237
|
4.9
|
36.4
|
1.0
|
C
|
H:SER238
|
4.9
|
39.7
|
0.5
|
C
|
H:SER238
|
4.9
|
40.1
|
0.5
|
C
|
H:THR243
|
4.9
|
36.1
|
1.0
|
|
Chlorine binding site 9 out
of 10 in 5bse
Go back to
Chlorine Binding Sites List in 5bse
Chlorine binding site 9 out
of 10 in the Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Cl302
b:41.5
occ:0.80
|
OG
|
I:SER238
|
2.7
|
41.5
|
0.5
|
O
|
I:HOH412
|
2.8
|
36.9
|
1.0
|
OG1
|
I:THR243
|
3.1
|
36.9
|
1.0
|
O
|
I:HOH498
|
3.3
|
36.5
|
1.0
|
N
|
I:THR243
|
3.4
|
34.1
|
1.0
|
O
|
I:HOH444
|
3.5
|
64.7
|
1.0
|
C2
|
J:MPO301
|
3.5
|
61.3
|
0.7
|
CB
|
I:THR243
|
3.5
|
36.1
|
1.0
|
CB
|
I:SER238
|
3.5
|
44.6
|
0.5
|
N
|
I:SER238
|
3.5
|
41.1
|
0.5
|
N
|
I:SER238
|
3.6
|
40.5
|
0.5
|
N
|
I:THR242
|
3.6
|
33.5
|
1.0
|
O
|
I:VAL236
|
3.7
|
38.7
|
1.0
|
C7
|
J:MPO301
|
3.7
|
52.0
|
0.7
|
N1
|
J:MPO301
|
3.7
|
47.9
|
0.7
|
OG
|
I:SER238
|
3.7
|
48.3
|
0.5
|
CB
|
I:SER238
|
3.8
|
41.9
|
0.5
|
OG1
|
I:THR242
|
3.9
|
37.2
|
1.0
|
C6
|
J:MPO301
|
3.9
|
48.1
|
0.7
|
CA
|
I:GLY241
|
4.0
|
35.0
|
1.0
|
CA
|
I:THR243
|
4.1
|
35.0
|
1.0
|
C
|
I:GLY241
|
4.1
|
34.6
|
1.0
|
CA
|
I:SER238
|
4.1
|
41.5
|
0.5
|
CA
|
I:SER238
|
4.2
|
40.1
|
0.5
|
C3
|
J:MPO301
|
4.2
|
59.9
|
0.7
|
O
|
I:SER238
|
4.4
|
37.5
|
0.5
|
C
|
I:THR242
|
4.4
|
34.4
|
1.0
|
O
|
I:SER238
|
4.4
|
37.1
|
0.5
|
CA
|
I:THR242
|
4.5
|
34.0
|
1.0
|
C1
|
J:MPO301
|
4.5
|
66.9
|
0.7
|
C
|
I:THR237
|
4.5
|
38.6
|
1.0
|
CA
|
I:THR237
|
4.7
|
36.4
|
1.0
|
C
|
I:SER238
|
4.7
|
40.0
|
0.5
|
C
|
I:SER238
|
4.7
|
39.3
|
0.5
|
C
|
I:VAL236
|
4.8
|
39.5
|
1.0
|
CB
|
I:THR242
|
4.8
|
35.7
|
1.0
|
O
|
I:HOH522
|
4.8
|
49.9
|
1.0
|
CG2
|
I:THR243
|
4.8
|
35.8
|
1.0
|
N
|
I:ILE244
|
4.9
|
32.6
|
1.0
|
C4
|
J:MPO301
|
4.9
|
47.9
|
0.7
|
N
|
I:GLY241
|
4.9
|
35.7
|
1.0
|
O
|
I:GLY241
|
5.0
|
34.2
|
1.0
|
|
Chlorine binding site 10 out
of 10 in 5bse
Go back to
Chlorine Binding Sites List in 5bse
Chlorine binding site 10 out
of 10 in the Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 10 of Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Cl302
b:43.4
occ:0.80
|
OG
|
J:SER238
|
2.8
|
38.9
|
0.5
|
O
|
J:HOH413
|
2.9
|
34.0
|
1.0
|
OG1
|
J:THR243
|
3.0
|
34.5
|
1.0
|
O
|
J:HOH469
|
3.3
|
37.3
|
1.0
|
N
|
J:THR243
|
3.3
|
32.4
|
1.0
|
C2
|
I:MPO301
|
3.4
|
59.4
|
0.7
|
N1
|
I:MPO301
|
3.4
|
46.1
|
0.7
|
CB
|
J:THR243
|
3.5
|
32.8
|
1.0
|
C7
|
I:MPO301
|
3.5
|
52.8
|
0.7
|
CB
|
J:SER238
|
3.6
|
44.1
|
0.5
|
N
|
J:THR242
|
3.7
|
34.2
|
1.0
|
O
|
J:VAL236
|
3.7
|
37.0
|
1.0
|
N
|
J:SER238
|
3.7
|
35.8
|
0.5
|
N
|
J:SER238
|
3.8
|
35.0
|
0.5
|
OG1
|
J:THR242
|
3.8
|
35.8
|
1.0
|
OG
|
J:SER238
|
3.8
|
49.9
|
0.5
|
CB
|
J:SER238
|
3.9
|
40.4
|
0.5
|
C3
|
I:MPO301
|
3.9
|
58.4
|
0.7
|
C6
|
I:MPO301
|
4.0
|
48.1
|
0.7
|
CA
|
J:THR243
|
4.0
|
31.6
|
1.0
|
C
|
J:GLY241
|
4.1
|
33.1
|
1.0
|
CA
|
J:GLY241
|
4.1
|
34.5
|
1.0
|
CA
|
J:SER238
|
4.2
|
38.1
|
0.5
|
CA
|
J:SER238
|
4.3
|
36.7
|
0.5
|
C
|
J:THR242
|
4.4
|
33.7
|
1.0
|
O
|
J:SER238
|
4.4
|
35.6
|
0.5
|
CA
|
J:THR242
|
4.5
|
33.5
|
1.0
|
O
|
J:SER238
|
4.5
|
35.6
|
0.5
|
C4
|
I:MPO301
|
4.6
|
51.2
|
0.7
|
C1
|
I:MPO301
|
4.7
|
68.9
|
0.7
|
C
|
J:THR237
|
4.7
|
35.5
|
1.0
|
CB
|
J:THR242
|
4.7
|
35.0
|
1.0
|
CA
|
J:THR237
|
4.8
|
33.8
|
1.0
|
C
|
J:SER238
|
4.8
|
37.1
|
0.5
|
C
|
J:SER238
|
4.8
|
37.8
|
0.5
|
CG2
|
J:THR243
|
4.8
|
32.9
|
1.0
|
C
|
J:VAL236
|
4.9
|
36.1
|
1.0
|
N
|
J:ILE244
|
4.9
|
32.1
|
1.0
|
C5
|
I:MPO301
|
4.9
|
51.6
|
0.7
|
O
|
J:HOH508
|
4.9
|
50.9
|
1.0
|
|
Reference:
M.Ruszkowski,
B.Nocek,
G.Forlani,
Z.Dauter.
The Structure of Medicago Truncatula Delta (1)-Pyrroline-5-Carboxylate Reductase Provides New Insights Into Regulation of Proline Biosynthesis in Plants. Front Plant Sci V. 6 869 2015.
ISSN: ESSN 1664-462X
PubMed: 26579138
DOI: 10.3389/FPLS.2015.00869
Page generated: Fri Jul 26 05:40:02 2024
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