Chlorine in PDB 5bsf: Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) in Complex with Nad+
Enzymatic activity of Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) in Complex with Nad+
All present enzymatic activity of Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) in Complex with Nad+:
1.5.1.2;
Protein crystallography data
The structure of Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) in Complex with Nad+, PDB code: 5bsf
was solved by
M.Ruszkowski,
B.Nocek,
G.Forlani,
Z.Dauter,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
39.13 /
1.85
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
87.540,
100.780,
101.610,
67.50,
85.86,
89.78
|
R / Rfree (%)
|
15.5 /
17.7
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) in Complex with Nad+
(pdb code 5bsf). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 10 binding sites of Chlorine where determined in the
Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) in Complex with Nad+, PDB code: 5bsf:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Chlorine binding site 1 out
of 10 in 5bsf
Go back to
Chlorine Binding Sites List in 5bsf
Chlorine binding site 1 out
of 10 in the Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) in Complex with Nad+
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) in Complex with Nad+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl303
b:39.8
occ:1.00
|
O
|
A:HOH427
|
2.8
|
21.8
|
1.0
|
OG
|
A:SER238
|
2.9
|
37.5
|
1.0
|
OG1
|
A:THR243
|
3.0
|
23.5
|
1.0
|
O
|
A:HOH539
|
3.4
|
28.9
|
1.0
|
CB
|
A:THR243
|
3.4
|
23.9
|
1.0
|
N
|
A:THR243
|
3.4
|
22.9
|
1.0
|
N1
|
B:MPO302
|
3.4
|
43.3
|
1.0
|
C3
|
B:MPO302
|
3.5
|
46.0
|
1.0
|
O
|
B:HOH459
|
3.5
|
58.2
|
1.0
|
N
|
A:SER238
|
3.6
|
30.3
|
1.0
|
C7
|
B:MPO302
|
3.6
|
42.3
|
1.0
|
O
|
A:VAL236
|
3.6
|
28.7
|
1.0
|
N
|
A:THR242
|
3.7
|
23.2
|
1.0
|
CB
|
A:SER238
|
3.8
|
34.2
|
1.0
|
OG1
|
A:THR242
|
4.0
|
25.2
|
1.0
|
CA
|
A:THR243
|
4.0
|
23.1
|
1.0
|
C6
|
B:MPO302
|
4.0
|
41.6
|
1.0
|
CA
|
A:GLY241
|
4.1
|
25.0
|
1.0
|
C
|
A:GLY241
|
4.1
|
25.0
|
1.0
|
CA
|
A:SER238
|
4.1
|
30.5
|
1.0
|
C2
|
B:MPO302
|
4.4
|
47.6
|
1.0
|
O
|
A:SER238
|
4.4
|
28.7
|
1.0
|
C
|
A:THR242
|
4.4
|
23.2
|
1.0
|
CA
|
A:THR242
|
4.5
|
24.1
|
1.0
|
C
|
A:THR237
|
4.5
|
29.9
|
1.0
|
CA
|
A:THR237
|
4.6
|
26.5
|
1.0
|
C
|
A:SER238
|
4.7
|
30.9
|
1.0
|
C
|
A:VAL236
|
4.7
|
28.1
|
1.0
|
C1
|
B:MPO302
|
4.8
|
68.0
|
1.0
|
C4
|
B:MPO302
|
4.8
|
51.1
|
1.0
|
CG2
|
A:THR243
|
4.8
|
23.4
|
1.0
|
CB
|
A:THR242
|
4.8
|
24.5
|
1.0
|
N
|
A:ILE244
|
4.8
|
21.9
|
1.0
|
O
|
A:HOH565
|
4.9
|
38.8
|
1.0
|
N
|
A:GLY241
|
4.9
|
26.6
|
1.0
|
O
|
A:GLY241
|
5.0
|
24.9
|
1.0
|
C
|
A:THR243
|
5.0
|
23.7
|
1.0
|
|
Chlorine binding site 2 out
of 10 in 5bsf
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Chlorine Binding Sites List in 5bsf
Chlorine binding site 2 out
of 10 in the Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) in Complex with Nad+
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) in Complex with Nad+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl303
b:33.7
occ:1.00
|
O
|
B:HOH431
|
2.9
|
21.7
|
1.0
|
OG1
|
B:THR243
|
3.0
|
24.3
|
1.0
|
OG
|
B:SER238
|
3.1
|
37.6
|
1.0
|
O
|
B:HOH515
|
3.2
|
24.9
|
1.0
|
N
|
B:THR243
|
3.4
|
22.9
|
1.0
|
CB
|
B:THR243
|
3.5
|
23.9
|
1.0
|
C7
|
A:MPO302
|
3.5
|
33.1
|
1.0
|
N1
|
A:MPO302
|
3.5
|
37.6
|
1.0
|
O
|
B:HOH517
|
3.6
|
45.5
|
1.0
|
O
|
B:VAL236
|
3.7
|
24.5
|
1.0
|
N
|
B:SER238
|
3.7
|
25.3
|
1.0
|
N
|
B:THR242
|
3.7
|
23.7
|
1.0
|
CB
|
B:SER238
|
3.9
|
30.5
|
1.0
|
C3
|
A:MPO302
|
3.9
|
43.2
|
1.0
|
OG1
|
B:THR242
|
3.9
|
24.7
|
1.0
|
CA
|
B:THR243
|
4.0
|
22.8
|
1.0
|
C6
|
A:MPO302
|
4.1
|
36.7
|
1.0
|
CA
|
B:GLY241
|
4.1
|
24.4
|
1.0
|
C2
|
A:MPO302
|
4.1
|
44.9
|
1.0
|
C
|
B:GLY241
|
4.2
|
24.1
|
1.0
|
CA
|
B:SER238
|
4.3
|
26.7
|
1.0
|
C
|
B:THR242
|
4.4
|
22.9
|
1.0
|
O
|
B:SER238
|
4.5
|
24.5
|
1.0
|
CA
|
B:THR242
|
4.5
|
23.3
|
1.0
|
C
|
B:THR237
|
4.7
|
25.0
|
1.0
|
C4
|
A:MPO302
|
4.8
|
38.5
|
1.0
|
CB
|
B:THR242
|
4.8
|
23.9
|
1.0
|
CG2
|
B:THR243
|
4.8
|
24.0
|
1.0
|
C
|
B:VAL236
|
4.8
|
24.0
|
1.0
|
C
|
B:SER238
|
4.8
|
26.4
|
1.0
|
CA
|
B:THR237
|
4.8
|
22.9
|
1.0
|
C1
|
A:MPO302
|
4.8
|
46.0
|
1.0
|
O
|
B:HOH562
|
4.8
|
54.3
|
1.0
|
O
|
B:HOH563
|
4.9
|
38.5
|
1.0
|
N
|
B:ILE244
|
4.9
|
23.1
|
1.0
|
|
Chlorine binding site 3 out
of 10 in 5bsf
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Chlorine Binding Sites List in 5bsf
Chlorine binding site 3 out
of 10 in the Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) in Complex with Nad+
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) in Complex with Nad+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl303
b:36.9
occ:1.00
|
O
|
C:HOH436
|
2.9
|
23.3
|
1.0
|
OG
|
C:SER238
|
3.0
|
40.7
|
1.0
|
OG1
|
C:THR243
|
3.1
|
22.5
|
1.0
|
O
|
C:HOH516
|
3.2
|
27.8
|
1.0
|
N
|
C:THR243
|
3.5
|
22.7
|
1.0
|
CB
|
C:THR243
|
3.5
|
22.9
|
1.0
|
C7
|
D:MPO302
|
3.5
|
47.1
|
1.0
|
O
|
D:HOH459
|
3.6
|
49.8
|
1.0
|
N1
|
D:MPO302
|
3.6
|
45.9
|
1.0
|
N
|
C:THR242
|
3.7
|
23.9
|
1.0
|
O
|
C:VAL236
|
3.8
|
27.4
|
1.0
|
N
|
C:SER238
|
3.8
|
28.2
|
1.0
|
OG1
|
C:THR242
|
3.8
|
26.9
|
1.0
|
CB
|
C:SER238
|
3.9
|
33.8
|
1.0
|
C3
|
D:MPO302
|
3.9
|
59.2
|
1.0
|
C6
|
D:MPO302
|
4.0
|
46.4
|
1.0
|
CA
|
C:GLY241
|
4.1
|
23.9
|
1.0
|
CA
|
C:THR243
|
4.1
|
21.7
|
1.0
|
C
|
C:GLY241
|
4.1
|
23.6
|
1.0
|
CA
|
C:SER238
|
4.3
|
29.5
|
1.0
|
C
|
C:THR242
|
4.4
|
22.4
|
1.0
|
C2
|
D:MPO302
|
4.5
|
55.3
|
1.0
|
CA
|
C:THR242
|
4.5
|
23.2
|
1.0
|
O
|
C:SER238
|
4.5
|
26.0
|
1.0
|
CB
|
C:THR242
|
4.7
|
24.5
|
1.0
|
C
|
C:THR237
|
4.8
|
28.2
|
1.0
|
O
|
C:HOH543
|
4.8
|
37.5
|
1.0
|
C
|
C:SER238
|
4.8
|
27.7
|
1.0
|
CG2
|
C:THR243
|
4.8
|
22.4
|
1.0
|
C4
|
D:MPO302
|
4.9
|
43.2
|
1.0
|
C
|
C:VAL236
|
4.9
|
26.8
|
1.0
|
C1
|
D:MPO302
|
4.9
|
58.6
|
1.0
|
CA
|
C:THR237
|
4.9
|
24.9
|
1.0
|
N
|
C:ILE244
|
4.9
|
22.3
|
1.0
|
|
Chlorine binding site 4 out
of 10 in 5bsf
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Chlorine Binding Sites List in 5bsf
Chlorine binding site 4 out
of 10 in the Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) in Complex with Nad+
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) in Complex with Nad+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl303
b:37.9
occ:1.00
|
O
|
D:HOH415
|
2.9
|
22.4
|
1.0
|
OG
|
D:SER238
|
3.0
|
41.0
|
1.0
|
OG1
|
D:THR243
|
3.1
|
25.3
|
1.0
|
O
|
D:HOH484
|
3.2
|
28.9
|
1.0
|
N
|
D:THR243
|
3.5
|
24.2
|
1.0
|
CB
|
D:THR243
|
3.5
|
25.3
|
1.0
|
C7
|
C:MPO302
|
3.6
|
40.0
|
1.0
|
O
|
D:VAL236
|
3.6
|
29.5
|
1.0
|
N
|
D:SER238
|
3.7
|
32.0
|
1.0
|
N1
|
C:MPO302
|
3.7
|
44.0
|
1.0
|
N
|
D:THR242
|
3.8
|
25.7
|
1.0
|
CB
|
D:SER238
|
3.8
|
34.7
|
1.0
|
OG1
|
D:THR242
|
3.9
|
28.9
|
1.0
|
C3
|
C:MPO302
|
4.0
|
54.0
|
1.0
|
C6
|
C:MPO302
|
4.0
|
38.8
|
1.0
|
CA
|
D:THR243
|
4.1
|
23.4
|
1.0
|
CA
|
D:GLY241
|
4.2
|
27.0
|
1.0
|
CA
|
D:SER238
|
4.2
|
33.0
|
1.0
|
C
|
D:GLY241
|
4.3
|
25.2
|
1.0
|
C2
|
C:MPO302
|
4.3
|
57.8
|
1.0
|
C
|
D:THR242
|
4.5
|
24.4
|
1.0
|
O
|
D:SER238
|
4.5
|
29.4
|
1.0
|
CA
|
D:THR242
|
4.5
|
25.1
|
1.0
|
C
|
D:THR237
|
4.7
|
30.2
|
1.0
|
C
|
D:VAL236
|
4.7
|
28.6
|
1.0
|
CA
|
D:THR237
|
4.8
|
28.9
|
1.0
|
CB
|
D:THR242
|
4.8
|
27.1
|
1.0
|
C
|
D:SER238
|
4.8
|
30.9
|
1.0
|
O
|
D:HOH495
|
4.8
|
53.1
|
1.0
|
CG2
|
D:THR243
|
4.8
|
24.9
|
1.0
|
O
|
D:HOH496
|
4.9
|
43.6
|
1.0
|
N
|
D:ILE244
|
5.0
|
22.7
|
1.0
|
C1
|
C:MPO302
|
5.0
|
57.0
|
1.0
|
C4
|
C:MPO302
|
5.0
|
43.1
|
1.0
|
|
Chlorine binding site 5 out
of 10 in 5bsf
Go back to
Chlorine Binding Sites List in 5bsf
Chlorine binding site 5 out
of 10 in the Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) in Complex with Nad+
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) in Complex with Nad+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl303
b:34.6
occ:1.00
|
O
|
E:HOH426
|
2.9
|
19.7
|
1.0
|
OG
|
E:SER238
|
2.9
|
31.6
|
0.5
|
OG1
|
E:THR243
|
3.0
|
21.8
|
1.0
|
OG
|
E:SER238
|
3.2
|
32.9
|
0.5
|
O
|
E:HOH524
|
3.2
|
26.4
|
1.0
|
C7
|
F:MPO302
|
3.4
|
33.7
|
1.0
|
N
|
E:THR243
|
3.4
|
21.3
|
1.0
|
CB
|
E:THR243
|
3.5
|
23.4
|
1.0
|
N1
|
F:MPO302
|
3.5
|
39.1
|
1.0
|
CB
|
E:SER238
|
3.6
|
31.4
|
0.5
|
N
|
E:SER238
|
3.6
|
27.7
|
0.5
|
N
|
E:SER238
|
3.7
|
27.6
|
0.5
|
O
|
E:VAL236
|
3.7
|
24.3
|
1.0
|
N
|
E:THR242
|
3.7
|
21.9
|
1.0
|
O
|
F:HOH492
|
3.7
|
41.9
|
1.0
|
CB
|
E:SER238
|
3.8
|
30.7
|
0.5
|
C3
|
F:MPO302
|
3.9
|
42.8
|
1.0
|
OG1
|
E:THR242
|
3.9
|
27.1
|
1.0
|
C6
|
F:MPO302
|
4.0
|
30.6
|
1.0
|
CA
|
E:THR243
|
4.1
|
21.7
|
1.0
|
CA
|
E:GLY241
|
4.1
|
23.1
|
1.0
|
C
|
E:GLY241
|
4.1
|
22.5
|
1.0
|
CA
|
E:SER238
|
4.2
|
29.3
|
0.5
|
CA
|
E:SER238
|
4.3
|
29.0
|
0.5
|
C2
|
F:MPO302
|
4.3
|
44.7
|
1.0
|
C
|
E:THR242
|
4.4
|
22.6
|
1.0
|
O
|
E:SER238
|
4.5
|
25.2
|
0.5
|
O
|
E:SER238
|
4.5
|
25.3
|
0.5
|
CA
|
E:THR242
|
4.5
|
22.4
|
1.0
|
C
|
E:THR237
|
4.6
|
27.4
|
1.0
|
CB
|
E:THR242
|
4.8
|
24.1
|
1.0
|
O
|
E:HOH557
|
4.8
|
32.0
|
1.0
|
CA
|
E:THR237
|
4.8
|
24.6
|
1.0
|
C
|
E:SER238
|
4.8
|
27.8
|
0.5
|
C
|
E:SER238
|
4.8
|
27.9
|
0.5
|
C
|
E:VAL236
|
4.8
|
26.6
|
1.0
|
CG2
|
E:THR243
|
4.8
|
23.2
|
1.0
|
C1
|
F:MPO302
|
4.9
|
44.4
|
1.0
|
C4
|
F:MPO302
|
4.9
|
37.4
|
1.0
|
N
|
E:ILE244
|
4.9
|
21.4
|
1.0
|
|
Chlorine binding site 6 out
of 10 in 5bsf
Go back to
Chlorine Binding Sites List in 5bsf
Chlorine binding site 6 out
of 10 in the Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) in Complex with Nad+
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) in Complex with Nad+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Cl303
b:37.7
occ:1.00
|
O
|
F:HOH436
|
2.9
|
25.4
|
1.0
|
OG
|
F:SER238
|
3.0
|
30.6
|
0.5
|
OG1
|
F:THR243
|
3.0
|
25.1
|
1.0
|
O
|
F:HOH536
|
3.1
|
28.1
|
1.0
|
N
|
F:THR243
|
3.4
|
25.9
|
1.0
|
O
|
F:HOH522
|
3.4
|
53.0
|
1.0
|
CB
|
F:THR243
|
3.5
|
25.6
|
1.0
|
N1
|
E:MPO302
|
3.6
|
46.2
|
1.0
|
N
|
F:THR242
|
3.6
|
24.7
|
1.0
|
C7
|
E:MPO302
|
3.6
|
50.4
|
1.0
|
CB
|
F:SER238
|
3.7
|
32.8
|
0.5
|
OG1
|
F:THR242
|
3.7
|
29.0
|
1.0
|
C3
|
E:MPO302
|
3.8
|
54.9
|
1.0
|
O
|
F:VAL236
|
3.8
|
26.1
|
1.0
|
N
|
F:SER238
|
3.9
|
29.5
|
0.5
|
OG
|
F:SER238
|
3.9
|
38.2
|
0.5
|
N
|
F:SER238
|
3.9
|
28.8
|
0.5
|
CB
|
F:SER238
|
4.0
|
30.7
|
0.5
|
CA
|
F:THR243
|
4.1
|
24.2
|
1.0
|
C6
|
E:MPO302
|
4.1
|
41.2
|
1.0
|
CA
|
F:GLY241
|
4.1
|
28.0
|
1.0
|
C
|
F:GLY241
|
4.1
|
28.1
|
1.0
|
C2
|
E:MPO302
|
4.2
|
51.8
|
1.0
|
C
|
F:THR242
|
4.4
|
26.1
|
1.0
|
CA
|
F:SER238
|
4.4
|
31.2
|
0.5
|
CA
|
F:THR242
|
4.4
|
27.5
|
1.0
|
CA
|
F:SER238
|
4.5
|
29.9
|
0.5
|
O
|
F:SER238
|
4.6
|
28.9
|
0.5
|
O
|
F:SER238
|
4.6
|
28.9
|
0.5
|
CB
|
F:THR242
|
4.7
|
26.6
|
1.0
|
C1
|
E:MPO302
|
4.7
|
58.3
|
1.0
|
O
|
F:HOH570
|
4.8
|
37.1
|
1.0
|
C4
|
E:MPO302
|
4.8
|
47.2
|
1.0
|
C
|
F:THR237
|
4.9
|
30.0
|
1.0
|
CG2
|
F:THR243
|
4.9
|
24.2
|
1.0
|
C
|
F:VAL236
|
4.9
|
26.5
|
1.0
|
C
|
F:SER238
|
5.0
|
29.6
|
0.5
|
N
|
F:ILE244
|
5.0
|
23.2
|
1.0
|
C
|
F:SER238
|
5.0
|
30.1
|
0.5
|
|
Chlorine binding site 7 out
of 10 in 5bsf
Go back to
Chlorine Binding Sites List in 5bsf
Chlorine binding site 7 out
of 10 in the Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) in Complex with Nad+
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) in Complex with Nad+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Cl303
b:36.2
occ:1.00
|
O
|
G:HOH425
|
2.8
|
22.5
|
1.0
|
OG
|
G:SER238
|
3.0
|
27.3
|
0.5
|
OG1
|
G:THR243
|
3.0
|
24.4
|
1.0
|
O
|
H:HOH473
|
3.3
|
47.1
|
1.0
|
O
|
G:HOH476
|
3.3
|
24.2
|
1.0
|
N
|
G:THR243
|
3.4
|
23.9
|
1.0
|
CB
|
G:THR243
|
3.5
|
24.4
|
1.0
|
N1
|
H:MPO302
|
3.6
|
37.8
|
1.0
|
C7
|
H:MPO302
|
3.6
|
40.1
|
1.0
|
CB
|
G:SER238
|
3.7
|
31.2
|
0.5
|
N
|
G:SER238
|
3.7
|
28.1
|
0.5
|
N
|
G:SER238
|
3.7
|
26.7
|
0.5
|
O
|
G:VAL236
|
3.7
|
26.6
|
1.0
|
N
|
G:THR242
|
3.8
|
24.3
|
1.0
|
OG
|
G:SER238
|
3.8
|
35.1
|
0.5
|
CB
|
G:SER238
|
3.8
|
27.2
|
0.5
|
OG1
|
G:THR242
|
3.9
|
24.5
|
1.0
|
C3
|
H:MPO302
|
3.9
|
37.9
|
1.0
|
C6
|
H:MPO302
|
4.0
|
39.2
|
1.0
|
CA
|
G:THR243
|
4.0
|
22.6
|
1.0
|
CA
|
G:GLY241
|
4.1
|
25.5
|
1.0
|
C
|
G:GLY241
|
4.2
|
23.3
|
1.0
|
CA
|
G:SER238
|
4.2
|
29.4
|
0.5
|
C2
|
H:MPO302
|
4.3
|
40.8
|
1.0
|
CA
|
G:SER238
|
4.3
|
27.1
|
0.5
|
C
|
G:THR242
|
4.4
|
24.3
|
1.0
|
O
|
G:SER238
|
4.5
|
26.7
|
0.5
|
O
|
G:SER238
|
4.5
|
27.6
|
0.5
|
CA
|
G:THR242
|
4.5
|
23.7
|
1.0
|
C
|
G:THR237
|
4.7
|
27.9
|
1.0
|
CB
|
G:THR242
|
4.8
|
24.0
|
1.0
|
CG2
|
G:THR243
|
4.8
|
24.6
|
1.0
|
C1
|
H:MPO302
|
4.8
|
42.9
|
1.0
|
CA
|
G:THR237
|
4.8
|
25.8
|
1.0
|
C
|
G:SER238
|
4.8
|
27.1
|
0.5
|
C
|
G:VAL236
|
4.8
|
27.9
|
1.0
|
C
|
G:SER238
|
4.8
|
28.2
|
0.5
|
O
|
G:HOH485
|
4.8
|
35.7
|
1.0
|
C4
|
H:MPO302
|
4.9
|
39.6
|
1.0
|
N
|
G:ILE244
|
4.9
|
23.6
|
1.0
|
|
Chlorine binding site 8 out
of 10 in 5bsf
Go back to
Chlorine Binding Sites List in 5bsf
Chlorine binding site 8 out
of 10 in the Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) in Complex with Nad+
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) in Complex with Nad+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Cl303
b:45.8
occ:1.00
|
O
|
H:HOH441
|
2.9
|
24.0
|
1.0
|
OG1
|
H:THR243
|
3.0
|
28.0
|
1.0
|
OG
|
H:SER238
|
3.1
|
41.5
|
1.0
|
O
|
H:HOH513
|
3.3
|
29.9
|
1.0
|
N1
|
G:MPO302
|
3.3
|
62.4
|
1.0
|
N
|
H:THR243
|
3.4
|
24.8
|
1.0
|
C7
|
G:MPO302
|
3.4
|
56.3
|
1.0
|
C3
|
G:MPO302
|
3.5
|
74.2
|
1.0
|
CB
|
H:THR243
|
3.5
|
26.2
|
1.0
|
O
|
H:VAL236
|
3.7
|
30.0
|
1.0
|
N
|
H:THR242
|
3.7
|
25.2
|
1.0
|
N
|
H:SER238
|
3.8
|
29.7
|
1.0
|
OG1
|
H:THR242
|
3.9
|
32.8
|
1.0
|
C2
|
G:MPO302
|
3.9
|
70.2
|
1.0
|
CB
|
H:SER238
|
3.9
|
37.1
|
1.0
|
C6
|
G:MPO302
|
4.0
|
55.4
|
1.0
|
CA
|
H:THR243
|
4.1
|
24.6
|
1.0
|
CA
|
H:GLY241
|
4.2
|
28.1
|
1.0
|
C
|
H:GLY241
|
4.2
|
27.5
|
1.0
|
CA
|
H:SER238
|
4.4
|
35.3
|
1.0
|
C
|
H:THR242
|
4.4
|
25.4
|
1.0
|
CA
|
H:THR242
|
4.5
|
26.9
|
1.0
|
O
|
H:SER238
|
4.6
|
31.7
|
1.0
|
C1
|
G:MPO302
|
4.6
|
78.2
|
1.0
|
C4
|
G:MPO302
|
4.6
|
62.8
|
1.0
|
C
|
H:THR237
|
4.8
|
31.2
|
1.0
|
CB
|
H:THR242
|
4.8
|
28.4
|
1.0
|
C
|
H:VAL236
|
4.8
|
29.4
|
1.0
|
CG2
|
H:THR243
|
4.8
|
26.8
|
1.0
|
CA
|
H:THR237
|
4.8
|
27.4
|
1.0
|
C
|
H:SER238
|
4.9
|
34.0
|
1.0
|
N
|
H:ILE244
|
4.9
|
24.2
|
1.0
|
O
|
H:HOH537
|
5.0
|
40.5
|
1.0
|
|
Chlorine binding site 9 out
of 10 in 5bsf
Go back to
Chlorine Binding Sites List in 5bsf
Chlorine binding site 9 out
of 10 in the Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) in Complex with Nad+
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) in Complex with Nad+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Cl303
b:40.7
occ:1.00
|
O
|
I:HOH443
|
2.8
|
27.8
|
1.0
|
OG
|
I:SER238
|
2.9
|
41.8
|
1.0
|
OG1
|
I:THR243
|
3.1
|
25.3
|
1.0
|
O
|
I:HOH510
|
3.3
|
31.8
|
1.0
|
N
|
I:THR243
|
3.4
|
24.8
|
1.0
|
N1
|
J:MPO302
|
3.4
|
45.0
|
1.0
|
CB
|
I:THR243
|
3.5
|
26.0
|
1.0
|
C3
|
J:MPO302
|
3.5
|
49.8
|
1.0
|
N
|
I:SER238
|
3.6
|
31.1
|
1.0
|
C7
|
J:MPO302
|
3.6
|
43.9
|
1.0
|
O
|
I:VAL236
|
3.7
|
29.3
|
1.0
|
N
|
I:THR242
|
3.7
|
24.4
|
1.0
|
CB
|
I:SER238
|
3.7
|
35.7
|
1.0
|
OG1
|
I:THR242
|
4.0
|
25.2
|
1.0
|
CA
|
I:THR243
|
4.1
|
24.6
|
1.0
|
CA
|
I:GLY241
|
4.1
|
24.4
|
1.0
|
C6
|
J:MPO302
|
4.1
|
43.8
|
1.0
|
C2
|
J:MPO302
|
4.1
|
51.8
|
1.0
|
CA
|
I:SER238
|
4.1
|
31.7
|
1.0
|
C
|
I:GLY241
|
4.1
|
24.6
|
1.0
|
O
|
I:SER238
|
4.4
|
28.3
|
1.0
|
C
|
I:THR242
|
4.5
|
23.6
|
1.0
|
C1
|
J:MPO302
|
4.5
|
60.2
|
1.0
|
CA
|
I:THR242
|
4.5
|
23.8
|
1.0
|
C
|
I:THR237
|
4.6
|
30.6
|
1.0
|
C
|
I:SER238
|
4.7
|
31.8
|
1.0
|
CA
|
I:THR237
|
4.7
|
30.2
|
1.0
|
C4
|
J:MPO302
|
4.7
|
44.5
|
1.0
|
CG2
|
I:THR243
|
4.8
|
25.2
|
1.0
|
C
|
I:VAL236
|
4.8
|
29.9
|
1.0
|
CB
|
I:THR242
|
4.9
|
25.2
|
1.0
|
O
|
I:HOH556
|
4.9
|
42.9
|
1.0
|
N
|
I:ILE244
|
4.9
|
22.6
|
1.0
|
N
|
I:GLY241
|
5.0
|
24.4
|
1.0
|
O
|
I:GLY241
|
5.0
|
22.9
|
1.0
|
|
Chlorine binding site 10 out
of 10 in 5bsf
Go back to
Chlorine Binding Sites List in 5bsf
Chlorine binding site 10 out
of 10 in the Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) in Complex with Nad+
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 10 of Crystal Structure of Medicago Truncatula (Delta)1-Pyrroline-5- Carboxylate Reductase (MTP5CR) in Complex with Nad+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Cl303
b:39.7
occ:1.00
|
O
|
J:HOH414
|
3.0
|
23.4
|
1.0
|
OG
|
J:SER238
|
3.0
|
40.5
|
1.0
|
OG1
|
J:THR243
|
3.0
|
23.5
|
1.0
|
O
|
J:HOH494
|
3.3
|
26.9
|
1.0
|
N1
|
I:MPO302
|
3.4
|
39.9
|
1.0
|
O
|
I:HOH437
|
3.4
|
49.8
|
1.0
|
N
|
J:THR243
|
3.4
|
24.2
|
1.0
|
CB
|
J:THR243
|
3.5
|
23.3
|
1.0
|
C7
|
I:MPO302
|
3.5
|
40.7
|
1.0
|
C3
|
I:MPO302
|
3.7
|
43.7
|
1.0
|
N
|
J:THR242
|
3.7
|
23.5
|
1.0
|
O
|
J:VAL236
|
3.7
|
27.4
|
1.0
|
N
|
J:SER238
|
3.7
|
27.9
|
1.0
|
CB
|
J:SER238
|
3.9
|
34.8
|
1.0
|
OG1
|
J:THR242
|
3.9
|
24.4
|
1.0
|
C6
|
I:MPO302
|
4.0
|
36.4
|
1.0
|
CA
|
J:THR243
|
4.0
|
22.8
|
1.0
|
CA
|
J:GLY241
|
4.1
|
24.4
|
1.0
|
C
|
J:GLY241
|
4.2
|
24.4
|
1.0
|
C2
|
I:MPO302
|
4.3
|
43.8
|
1.0
|
CA
|
J:SER238
|
4.3
|
29.4
|
1.0
|
C
|
J:THR242
|
4.5
|
23.1
|
1.0
|
O
|
J:SER238
|
4.5
|
27.9
|
1.0
|
CA
|
J:THR242
|
4.5
|
23.1
|
1.0
|
C1
|
I:MPO302
|
4.6
|
49.2
|
1.0
|
C
|
J:THR237
|
4.7
|
25.7
|
1.0
|
C4
|
I:MPO302
|
4.7
|
39.5
|
1.0
|
O
|
J:HOH529
|
4.7
|
41.1
|
1.0
|
CG2
|
J:THR243
|
4.8
|
23.0
|
1.0
|
CA
|
J:THR237
|
4.8
|
23.8
|
1.0
|
CB
|
J:THR242
|
4.8
|
23.9
|
1.0
|
C
|
J:SER238
|
4.8
|
28.8
|
1.0
|
C
|
J:VAL236
|
4.8
|
26.6
|
1.0
|
N
|
J:ILE244
|
4.9
|
22.7
|
1.0
|
|
Reference:
M.Ruszkowski,
B.Nocek,
G.Forlani,
Z.Dauter.
The Structure of Medicago Truncatula Delta (1)-Pyrroline-5-Carboxylate Reductase Provides New Insights Into Regulation of Proline Biosynthesis in Plants. Front Plant Sci V. 6 869 2015.
ISSN: ESSN 1664-462X
PubMed: 26579138
DOI: 10.3389/FPLS.2015.00869
Page generated: Fri Jul 26 05:40:05 2024
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