Chlorine in PDB 5bxy: Crystal Structure of Rna Methyltransferase From Salinibacter Ruber in Complex with S-Adenosyl-L-Homocysteine

The structure of Crystal Structure of Rna Methyltransferase From Salinibacter Ruber in Complex with S-Adenosyl-L-Homocysteine, PDB code: 5bxy was solved by K.B.Handing, C.Larowe, I.G.Shabalin, M.Stead, B.S.Hillerich, M.Ahmed, J.Bonanno, S.C.Almo, W.Minor, New York Structural Genomics Researchconsortium (Nysgrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.75
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	43.574, 86.040, 85.057, 90.00, 90.00, 90.00
R / Rfree (%)	14.8 / 18.8

The structure of Crystal Structure of Rna Methyltransferase From Salinibacter Ruber in Complex with S-Adenosyl-L-Homocysteine also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Chlorine atom in the Crystal Structure of Rna Methyltransferase From Salinibacter Ruber in Complex with S-Adenosyl-L-Homocysteine (pdb code 5bxy). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Rna Methyltransferase From Salinibacter Ruber in Complex with S-Adenosyl-L-Homocysteine, PDB code: 5bxy:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Crystal Structure of Rna Methyltransferase From Salinibacter Ruber in Complex with S-Adenosyl-L-Homocysteine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Rna Methyltransferase From Salinibacter Ruber in Complex with S-Adenosyl-L-Homocysteine within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl202 b:18.6 occ:1.00 NE A:ARG63 3.1 12.5 1.0 O A:HOH411 3.2 16.6 1.0 N A:PHE77 3.2 11.2 1.0 O A:PHE77 3.7 10.7 1.0 CG A:ARG63 3.8 12.4 1.0 CD A:ARG63 3.9 13.8 1.0 CA A:GLU76 3.9 9.2 1.0 NH2 A:ARG63 3.9 14.0 1.0 CZ A:ARG63 4.0 12.1 1.0 C A:GLU76 4.0 9.8 1.0 CA A:PHE77 4.1 8.4 1.0 CG A:GLU76 4.2 28.2 1.0 CB A:PHE77 4.3 10.1 1.0 C A:PHE77 4.3 11.2 1.0 CD2 A:PHE77 4.5 13.7 1.0 O A:HOH310 4.5 14.4 1.0 CB A:GLU76 4.6 12.4 1.0 O A:VAL75 4.7 21.7 1.0 O A:HOH366 4.9 20.3 1.0 CG A:PHE77 4.9 10.0 1.0

Chlorine binding site 2 out of 3 in the Crystal Structure of Rna Methyltransferase From Salinibacter Ruber in Complex with S-Adenosyl-L-Homocysteine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Rna Methyltransferase From Salinibacter Ruber in Complex with S-Adenosyl-L-Homocysteine within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl203 b:30.7 occ:1.00 NH1 A:ARG144 3.3 26.1 1.0 NH1 A:ARG133 3.4 20.1 1.0 NH2 A:ARG144 3.6 25.9 1.0 CZ A:ARG144 3.9 21.4 1.0 CD A:ARG133 4.0 14.2 1.0 CG A:ARG133 4.1 16.4 1.0 CZ A:ARG133 4.5 15.9 1.0 NE A:ARG133 4.7 15.7 1.0

Chlorine binding site 3 out of 3 in the Crystal Structure of Rna Methyltransferase From Salinibacter Ruber in Complex with S-Adenosyl-L-Homocysteine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Rna Methyltransferase From Salinibacter Ruber in Complex with S-Adenosyl-L-Homocysteine within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl202 b:20.4 occ:1.00 N B:PHE77 3.2 9.9 1.0 O B:HOH412 3.2 25.7 1.0 NE B:ARG63 3.2 22.6 1.0 O B:HOH445 3.5 47.8 1.0 O B:PHE77 3.7 14.0 1.0 CG B:ARG63 3.8 18.6 1.0 CA B:GLU76 3.8 14.2 1.0 CD B:ARG63 3.9 23.0 1.0 O B:HOH321 4.0 35.0 1.0 C B:GLU76 4.0 11.9 1.0 CZ B:ARG63 4.1 26.7 1.0 NH2 B:ARG63 4.1 23.0 1.0 CA B:PHE77 4.1 10.3 1.0 CG B:GLU76 4.2 29.0 1.0 O B:HOH354 4.2 29.6 1.0 CB B:PHE77 4.3 11.7 1.0 C B:PHE77 4.4 11.6 1.0 CD2 B:PHE77 4.4 14.3 1.0 CB B:GLU76 4.5 19.3 1.0 O B:VAL75 4.5 16.9 1.0 CG B:PHE77 4.9 10.3 1.0 N B:GLU76 4.9 10.9 1.0 O B:HOH364 5.0 18.7 1.0 CB B:ARG63 5.0 20.7 1.0

K.B.Handing, C.Larowe, I.G.Shabalin, M.Stead, B.S.Hillerich, M.Ahmed, J.Bonanno, S.C.Almo, W.Minor. Crystal Structure of Rna Methylase Family Protein From Salinibacterruber in Complex with S-Adenosyl-L-Homocysteine. To Be Published.