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Chlorine in PDB 5byf: Crystal Structure of Human Ribokinase in Complex with Amp

Enzymatic activity of Crystal Structure of Human Ribokinase in Complex with Amp

All present enzymatic activity of Crystal Structure of Human Ribokinase in Complex with Amp:
2.7.1.15;

Protein crystallography data

The structure of Crystal Structure of Human Ribokinase in Complex with Amp, PDB code: 5byf was solved by J.Park, J.Chakrabarti, B.Singh, R.S.Gupta, M.S.Junop, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.50 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 56.090, 63.870, 181.020, 90.00, 90.00, 90.00
R / Rfree (%) 17.5 / 22.2

Other elements in 5byf:

The structure of Crystal Structure of Human Ribokinase in Complex with Amp also contains other interesting chemical elements:

Sodium (Na) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human Ribokinase in Complex with Amp (pdb code 5byf). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Human Ribokinase in Complex with Amp, PDB code: 5byf:

Chlorine binding site 1 out of 1 in 5byf

Go back to Chlorine Binding Sites List in 5byf
Chlorine binding site 1 out of 1 in the Crystal Structure of Human Ribokinase in Complex with Amp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Ribokinase in Complex with Amp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl404

b:60.4
occ:1.00
NH2 B:ARG34 2.9 43.8 1.0
O B:HOH537 3.2 33.4 1.0
O B:HOH577 3.2 32.2 1.0
NH1 B:ARG34 3.5 43.4 1.0
CZ B:ARG34 3.6 43.9 1.0
OG B:SER33 4.7 27.0 1.0
NE B:ARG34 4.9 39.5 1.0

Reference:

J.Park, J.Chakrabarti, B.Singh, R.S.Gupta, M.S.Junop. Crystal Structure of Human Ribokinase in Complex with Amp To Be Published.
Page generated: Sat Dec 12 11:33:43 2020

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