Atomistry » Chlorine » PDB 5bvf-5c2b » 5c18
Atomistry »
  Chlorine »
    PDB 5bvf-5c2b »
      5c18 »

Chlorine in PDB 5c18: P97-DELTA709-728 in Complex with Atp-Gamma-S

Enzymatic activity of P97-DELTA709-728 in Complex with Atp-Gamma-S

All present enzymatic activity of P97-DELTA709-728 in Complex with Atp-Gamma-S:
3.6.4.6;

Protein crystallography data

The structure of P97-DELTA709-728 in Complex with Atp-Gamma-S, PDB code: 5c18 was solved by P.Haenzelmann, H.Schindelin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.99 / 3.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 140.330, 180.059, 255.612, 90.00, 90.00, 90.00
R / Rfree (%) 21.1 / 24.9

Other elements in 5c18:

The structure of P97-DELTA709-728 in Complex with Atp-Gamma-S also contains other interesting chemical elements:

Magnesium (Mg) 12 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the P97-DELTA709-728 in Complex with Atp-Gamma-S (pdb code 5c18). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the P97-DELTA709-728 in Complex with Atp-Gamma-S, PDB code: 5c18:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 5c18

Go back to Chlorine Binding Sites List in 5c18
Chlorine binding site 1 out of 6 in the P97-DELTA709-728 in Complex with Atp-Gamma-S


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of P97-DELTA709-728 in Complex with Atp-Gamma-S within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl905

b:87.8
occ:1.00
H A:ASP630 2.4 77.5 1.0
HD13 A:ILE601 2.7 0.3 1.0
HB2 A:ASP630 3.1 85.7 1.0
HD11 A:ILE601 3.1 0.3 1.0
HB2 A:ALA583 3.1 0.9 1.0
HA A:ILE629 3.2 73.2 1.0
N A:ASP630 3.2 64.6 1.0
CD1 A:ILE601 3.2 83.6 1.0
HD12 A:ILE601 3.3 0.3 1.0
HH11 A:ARG586 3.4 0.5 1.0
HA A:ALA583 3.5 0.1 1.0
HD12 A:ILE633 3.5 73.7 1.0
HB3 A:ASP630 3.7 85.7 1.0
CB A:ASP630 3.7 71.4 1.0
HD11 A:ILE633 3.7 73.7 1.0
HG23 A:ILE629 3.9 73.9 1.0
CB A:ALA583 3.9 90.8 1.0
HD3 A:ARG586 4.0 0.8 1.0
CA A:ILE629 4.0 61.0 1.0
O A:ILE628 4.0 55.6 1.0
CA A:ASP630 4.0 63.8 1.0
C A:ILE629 4.0 62.8 1.0
NH1 A:ARG586 4.1 0.9 1.0
CD1 A:ILE633 4.1 61.4 1.0
HG22 A:ILE629 4.1 73.9 1.0
CA A:ALA583 4.1 91.7 1.0
HB1 A:ALA583 4.1 0.9 1.0
HH12 A:ARG586 4.2 0.5 1.0
HG22 A:ILE582 4.2 95.4 1.0
HG21 A:ILE601 4.3 89.3 1.0
CG2 A:ILE629 4.4 61.6 1.0
N A:ALA583 4.4 90.2 1.0
H A:ALA583 4.4 0.2 1.0
HA A:ASP630 4.6 76.6 1.0
HD13 A:ILE633 4.7 73.7 1.0
CG1 A:ILE601 4.7 78.1 1.0
HB3 A:ALA583 4.7 0.9 1.0
HD2 A:ARG586 4.7 0.8 1.0
HB A:ILE582 4.8 97.7 1.0
HB3 A:LEU579 4.8 72.3 1.0
CD A:ARG586 4.8 1.0 1.0
O A:LEU579 4.8 69.2 1.0
HG12 A:ILE601 4.9 93.7 1.0
CB A:ILE629 4.9 63.9 1.0
C A:ILE628 4.9 62.3 1.0
HG21 A:ILE582 4.9 95.4 1.0
N A:ILE629 5.0 64.6 1.0
HG13 A:ILE633 5.0 67.6 1.0
CG2 A:ILE582 5.0 79.5 1.0

Chlorine binding site 2 out of 6 in 5c18

Go back to Chlorine Binding Sites List in 5c18
Chlorine binding site 2 out of 6 in the P97-DELTA709-728 in Complex with Atp-Gamma-S


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of P97-DELTA709-728 in Complex with Atp-Gamma-S within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl905

b:92.5
occ:1.00
H B:ASP630 2.8 87.8 1.0
HB2 B:ASP630 2.9 90.8 1.0
HH21 B:ARG586 3.0 0.2 1.0
HG21 B:ILE601 3.3 0.0 1.0
HB2 B:ALA583 3.5 92.3 1.0
HA B:ALA583 3.5 93.5 1.0
N B:ASP630 3.6 73.2 1.0
HG22 B:ILE582 3.6 83.8 1.0
HD11 B:ILE633 3.6 76.0 1.0
CB B:ASP630 3.7 75.6 1.0
HD3 B:ARG586 3.7 0.2 1.0
NH2 B:ARG586 3.7 0.2 1.0
HB3 B:ASP630 3.8 90.8 1.0
HA B:ILE629 3.8 86.8 1.0
HD12 B:ILE633 3.9 76.0 1.0
HH22 B:ARG586 3.9 0.2 1.0
CA B:ALA583 4.2 78.0 1.0
HD2 B:ARG586 4.2 0.2 1.0
HG21 B:ILE582 4.2 83.8 1.0
CD1 B:ILE633 4.2 63.3 1.0
CB B:ALA583 4.2 76.9 1.0
CG2 B:ILE601 4.2 83.3 1.0
CA B:ASP630 4.3 72.0 1.0
CG2 B:ILE582 4.3 69.8 1.0
N B:ALA583 4.4 71.7 1.0
CD B:ARG586 4.4 0.2 1.0
O B:ILE628 4.4 75.5 1.0
H B:ALA583 4.4 86.0 1.0
HG23 B:ILE629 4.4 83.2 1.0
HG12 B:ILE601 4.4 0.8 1.0
HB1 B:ALA583 4.5 92.3 1.0
HB B:ILE582 4.5 84.9 1.0
HG22 B:ILE601 4.5 0.0 1.0
C B:ILE629 4.5 72.9 1.0
CA B:ILE629 4.6 72.3 1.0
HD13 B:ILE601 4.7 0.3 1.0
HB B:ILE601 4.7 99.4 1.0
HA B:ASP630 4.7 86.3 1.0
HG22 B:ILE629 4.7 83.2 1.0
HD13 B:ILE633 4.8 76.0 1.0
HG23 B:ILE601 4.8 0.0 1.0
CZ B:ARG586 4.9 1.0 1.0
CB B:ILE601 4.9 82.8 1.0
O B:LEU579 4.9 76.4 1.0
CG B:ASP630 4.9 79.0 1.0
C B:ILE582 5.0 74.8 1.0
CB B:ILE582 5.0 70.8 1.0
HB3 B:LEU579 5.0 66.8 1.0

Chlorine binding site 3 out of 6 in 5c18

Go back to Chlorine Binding Sites List in 5c18
Chlorine binding site 3 out of 6 in the P97-DELTA709-728 in Complex with Atp-Gamma-S


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of P97-DELTA709-728 in Complex with Atp-Gamma-S within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl905

b:1.0
occ:1.00
H C:ASP630 2.4 96.4 1.0
HB2 C:ASP630 2.8 0.3 1.0
HD13 C:ILE601 2.9 0.7 1.0
HB2 C:ALA583 3.0 0.7 1.0
HD11 C:ILE601 3.1 0.7 1.0
N C:ASP630 3.2 80.3 1.0
HH21 C:ARG586 3.2 0.9 1.0
CD1 C:ILE601 3.3 0.6 1.0
HA C:ILE629 3.3 0.6 1.0
HD12 C:ILE601 3.3 0.7 1.0
HA C:ALA583 3.4 0.8 1.0
CB C:ASP630 3.6 85.2 1.0
CB C:ALA583 3.7 95.6 1.0
HB3 C:ASP630 3.8 0.3 1.0
O C:ILE628 3.8 91.8 1.0
HB1 C:ALA583 3.9 0.7 1.0
CA C:ASP630 3.9 82.3 1.0
NH2 C:ARG586 4.0 0.1 1.0
CA C:ALA583 4.0 96.5 1.0
C C:ILE629 4.0 86.1 1.0
HD3 C:ARG586 4.0 0.3 1.0
CA C:ILE629 4.1 93.0 1.0
HH22 C:ARG586 4.1 0.9 1.0
HD12 C:ILE633 4.2 76.9 1.0
HG23 C:ILE629 4.2 0.3 1.0
HD2 C:ARG586 4.3 0.3 1.0
HG22 C:ILE582 4.3 95.3 1.0
HA C:ASP630 4.3 98.8 1.0
N C:ALA583 4.4 94.5 1.0
H C:ALA583 4.4 0.4 1.0
HD11 C:ILE633 4.4 76.9 1.0
HG21 C:ILE601 4.5 0.3 1.0
HB3 C:ALA583 4.5 0.7 1.0
CD C:ARG586 4.6 0.8 1.0
HG22 C:ILE629 4.6 0.3 1.0
CG1 C:ILE601 4.8 0.4 1.0
CD1 C:ILE633 4.8 64.0 1.0
CG2 C:ILE629 4.8 0.1 1.0
C C:ILE628 4.8 93.0 1.0
HB C:ILE582 4.9 0.1 1.0
CG C:ASP630 4.9 89.9 1.0
N C:ILE629 4.9 94.8 1.0
HG12 C:ILE601 5.0 0.2 1.0
O C:LEU579 5.0 85.4 1.0

Chlorine binding site 4 out of 6 in 5c18

Go back to Chlorine Binding Sites List in 5c18
Chlorine binding site 4 out of 6 in the P97-DELTA709-728 in Complex with Atp-Gamma-S


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of P97-DELTA709-728 in Complex with Atp-Gamma-S within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl905

b:99.5
occ:1.00
H D:ASP630 2.5 0.4 1.0
HD13 D:ILE601 2.7 0.7 1.0
HB2 D:ALA583 2.9 0.2 1.0
HB2 D:ASP630 2.9 0.9 1.0
HD12 D:ILE629 3.0 0.2 1.0
HD11 D:ILE601 3.0 0.7 1.0
HA D:ILE629 3.2 0.8 1.0
N D:ASP630 3.2 0.3 1.0
CD1 D:ILE601 3.2 0.2 1.0
HH21 D:ARG586 3.3 1.0 1.0
HA D:ALA583 3.3 0.3 1.0
HD12 D:ILE601 3.6 0.7 1.0
CB D:ALA583 3.6 0.0 1.0
CB D:ASP630 3.7 0.9 1.0
HB3 D:ASP630 3.7 0.9 1.0
HD11 D:ILE633 3.8 0.7 1.0
HB1 D:ALA583 3.8 0.2 1.0
CD1 D:ILE629 3.9 96.9 1.0
HE D:ARG586 3.9 0.3 1.0
HD12 D:ILE633 3.9 0.7 1.0
CA D:ALA583 3.9 0.2 1.0
CA D:ASP630 4.0 0.7 1.0
CA D:ILE629 4.0 0.2 1.0
HD11 D:ILE629 4.0 0.2 1.0
C D:ILE629 4.1 0.5 1.0
NH2 D:ARG586 4.1 0.8 1.0
O D:ILE628 4.1 0.3 1.0
HG13 D:ILE629 4.2 0.0 1.0
HG22 D:ILE582 4.2 0.4 1.0
H D:ALA583 4.3 0.9 1.0
N D:ALA583 4.3 0.9 1.0
CD1 D:ILE633 4.3 89.7 1.0
HG21 D:ILE601 4.4 0.2 1.0
HA D:ASP630 4.4 0.9 1.0
HB3 D:ALA583 4.5 0.2 1.0
HD13 D:ILE629 4.5 0.2 1.0
CG1 D:ILE629 4.5 99.2 1.0
CG1 D:ILE601 4.6 0.9 1.0
NE D:ARG586 4.6 0.6 1.0
HH22 D:ARG586 4.6 1.0 1.0
HG12 D:ILE601 4.6 0.8 1.0
HD13 D:ILE633 4.8 0.7 1.0
O D:LEU579 4.8 92.2 1.0
CZ D:ARG586 4.8 0.3 1.0
HB D:ILE582 4.9 0.1 1.0
CB D:ILE629 4.9 0.2 1.0
HB3 D:LEU579 4.9 94.2 1.0
C D:ILE628 5.0 0.7 1.0
CG D:ASP630 5.0 0.5 1.0
HG21 D:ILE582 5.0 0.4 1.0
CG2 D:ILE582 5.0 92.0 1.0
N D:ILE629 5.0 0.2 1.0

Chlorine binding site 5 out of 6 in 5c18

Go back to Chlorine Binding Sites List in 5c18
Chlorine binding site 5 out of 6 in the P97-DELTA709-728 in Complex with Atp-Gamma-S


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of P97-DELTA709-728 in Complex with Atp-Gamma-S within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl905

b:93.8
occ:1.00
H E:ASP630 2.3 0.7 1.0
HD12 E:ILE629 2.8 0.4 1.0
HD13 E:ILE601 2.9 0.8 1.0
HB2 E:ASP630 3.0 0.6 1.0
HA E:ILE629 3.0 0.1 1.0
HB2 E:ALA583 3.0 0.5 1.0
N E:ASP630 3.1 84.8 1.0
HD11 E:ILE601 3.1 0.8 1.0
CD1 E:ILE601 3.4 0.5 1.0
HA E:ALA583 3.6 0.9 1.0
CD1 E:ILE629 3.6 96.2 1.0
HD12 E:ILE633 3.6 0.3 1.0
HD12 E:ILE601 3.7 0.8 1.0
CB E:ASP630 3.7 91.3 1.0
HD11 E:ILE633 3.8 0.3 1.0
HB3 E:ASP630 3.8 0.6 1.0
HD11 E:ILE629 3.8 0.4 1.0
HG13 E:ILE629 3.8 0.1 1.0
CA E:ILE629 3.8 83.4 1.0
CB E:ALA583 3.8 89.5 1.0
C E:ILE629 3.9 81.1 1.0
CA E:ASP630 4.0 87.0 1.0
O E:ILE628 4.1 80.3 1.0
HB1 E:ALA583 4.1 0.5 1.0
CA E:ALA583 4.1 87.5 1.0
CD1 E:ILE633 4.1 94.5 1.0
HH11 E:ARG586 4.2 0.0 1.0
CG1 E:ILE629 4.2 96.8 1.0
H E:ALA583 4.3 0.3 1.0
HD13 E:ILE629 4.3 0.4 1.0
N E:ALA583 4.4 85.2 1.0
HG22 E:ILE582 4.4 99.0 1.0
HA E:ASP630 4.4 0.4 1.0
HD3 E:ARG586 4.5 0.5 1.0
HB3 E:LEU579 4.6 85.8 1.0
HG21 E:ILE601 4.6 0.1 1.0
HB3 E:ALA583 4.6 0.5 1.0
O E:LEU579 4.6 83.1 1.0
HB E:ILE582 4.6 97.6 1.0
CB E:ILE629 4.7 98.9 1.0
HD13 E:ILE633 4.7 0.3 1.0
CG1 E:ILE601 4.8 98.1 1.0
N E:ILE629 4.8 81.7 1.0
C E:ILE628 4.9 82.9 1.0
HG12 E:ILE601 4.9 0.7 1.0
NH1 E:ARG586 4.9 0.5 1.0
CG E:ASP630 5.0 95.0 1.0

Chlorine binding site 6 out of 6 in 5c18

Go back to Chlorine Binding Sites List in 5c18
Chlorine binding site 6 out of 6 in the P97-DELTA709-728 in Complex with Atp-Gamma-S


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of P97-DELTA709-728 in Complex with Atp-Gamma-S within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl905

b:98.3
occ:1.00
H F:ASP630 2.4 85.3 1.0
HB2 F:ALA583 2.8 0.9 1.0
HD13 F:ILE601 2.8 1.0 1.0
HB2 F:ASP630 2.9 96.5 1.0
HD11 F:ILE601 3.0 1.0 1.0
HD12 F:ILE629 3.1 0.7 1.0
N F:ASP630 3.2 71.1 1.0
HA F:ILE629 3.2 75.3 1.0
CD1 F:ILE601 3.3 95.8 1.0
HA F:ALA583 3.4 0.8 1.0
HD12 F:ILE601 3.5 1.0 1.0
CB F:ALA583 3.6 92.4 1.0
CB F:ASP630 3.6 80.4 1.0
HH11 F:ARG586 3.7 0.3 1.0
HB3 F:ASP630 3.7 96.5 1.0
HB1 F:ALA583 3.8 0.9 1.0
HD12 F:ILE633 3.8 95.3 1.0
HD11 F:ILE633 3.9 95.3 1.0
CA F:ALA583 3.9 93.2 1.0
CD1 F:ILE629 4.0 85.6 1.0
CA F:ASP630 4.0 76.0 1.0
CA F:ILE629 4.0 62.8 1.0
C F:ILE629 4.0 62.8 1.0
O F:ILE628 4.1 71.9 1.0
HG22 F:ILE582 4.1 81.1 1.0
H F:ALA583 4.2 0.0 1.0
HD11 F:ILE629 4.2 0.7 1.0
N F:ALA583 4.3 89.2 1.0
HG13 F:ILE629 4.3 0.9 1.0
CD1 F:ILE633 4.3 79.4 1.0
HA F:ASP630 4.4 91.2 1.0
HD3 F:ARG586 4.4 1.0 1.0
HB3 F:ALA583 4.4 0.9 1.0
HD2 F:ARG586 4.5 1.0 1.0
NH1 F:ARG586 4.5 0.6 1.0
HD13 F:ILE629 4.6 0.7 1.0
CG1 F:ILE629 4.6 84.0 1.0
HG21 F:ILE601 4.6 0.0 1.0
HB3 F:LEU579 4.6 67.5 1.0
HH12 F:ARG586 4.7 0.3 1.0
CG1 F:ILE601 4.7 92.2 1.0
O F:LEU579 4.7 71.5 1.0
HG12 F:ILE601 4.8 0.7 1.0
HD13 F:ILE633 4.9 95.3 1.0
HG21 F:ILE582 4.9 81.1 1.0
C F:ILE628 4.9 69.7 1.0
CG2 F:ILE582 4.9 67.5 1.0
CD F:ARG586 4.9 0.1 1.0
HB F:ILE582 4.9 84.6 1.0
CB F:ILE629 4.9 80.6 1.0
N F:ILE629 4.9 66.5 1.0
CG F:ASP630 5.0 85.0 1.0

Reference:

P.Hanzelmann, H.Schindelin. Structural Basis of Atp Hydrolysis and Intersubunit Signaling in the Aaa+ Atpase P97. Structure V. 24 127 2016.
ISSN: ISSN 0969-2126
PubMed: 26712278
DOI: 10.1016/J.STR.2015.10.026
Page generated: Fri Jul 26 05:50:22 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy