Atomistry » Chlorine » PDB 5bvf-5c2b » 5c29
Atomistry »
  Chlorine »
    PDB 5bvf-5c2b »
      5c29 »

Chlorine in PDB 5c29: PDE10 Complexed with 6-Chloro-2-Cyclopropyl-5-Methyl-N-Propyl- Pyrimidin-4-Amine

Enzymatic activity of PDE10 Complexed with 6-Chloro-2-Cyclopropyl-5-Methyl-N-Propyl- Pyrimidin-4-Amine

All present enzymatic activity of PDE10 Complexed with 6-Chloro-2-Cyclopropyl-5-Methyl-N-Propyl- Pyrimidin-4-Amine:
3.1.4.17; 3.1.4.35;

Protein crystallography data

The structure of PDE10 Complexed with 6-Chloro-2-Cyclopropyl-5-Methyl-N-Propyl- Pyrimidin-4-Amine, PDB code: 5c29 was solved by Y.Yan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.18 / 2.05
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.480, 81.190, 152.990, 90.00, 90.00, 90.00
R / Rfree (%) 20.9 / 23.4

Other elements in 5c29:

The structure of PDE10 Complexed with 6-Chloro-2-Cyclopropyl-5-Methyl-N-Propyl- Pyrimidin-4-Amine also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the PDE10 Complexed with 6-Chloro-2-Cyclopropyl-5-Methyl-N-Propyl- Pyrimidin-4-Amine (pdb code 5c29). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the PDE10 Complexed with 6-Chloro-2-Cyclopropyl-5-Methyl-N-Propyl- Pyrimidin-4-Amine, PDB code: 5c29:

Chlorine binding site 1 out of 1 in 5c29

Go back to Chlorine Binding Sites List in 5c29
Chlorine binding site 1 out of 1 in the PDE10 Complexed with 6-Chloro-2-Cyclopropyl-5-Methyl-N-Propyl- Pyrimidin-4-Amine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of PDE10 Complexed with 6-Chloro-2-Cyclopropyl-5-Methyl-N-Propyl- Pyrimidin-4-Amine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl803

b:33.7
occ:1.00
 CL A:4XY803 0.0 33.7 1.0
C A:4XY803 1.7 32.1 1.0
N A:4XY803 2.5 31.4 1.0
C4 A:4XY803 2.7 31.7 1.0
C8 A:4XY803 3.1 31.9 1.0
OE1 A:GLN716 3.4 31.2 1.0
CG1 A:VAL668 3.5 26.2 1.0
O A:HOH937 3.6 23.8 1.0
O A:HOH982 3.8 26.3 1.0
C1 A:4XY803 3.8 32.1 1.0
NE2 A:GLN716 3.9 30.5 1.0
CE2 A:PHE719 3.9 31.7 1.0
CD1 A:ILE682 3.9 31.8 1.0
C3 A:4XY803 3.9 30.6 1.0
CD2 A:PHE719 4.0 30.5 1.0
CD A:GLN716 4.1 36.7 1.0
N2 A:4XY803 4.3 30.9 1.0
OG A:SER667 4.5 32.9 1.0
CE1 A:TYR720 4.7 33.4 1.0
CZ A:PHE719 4.7 28.5 1.0
CG A:PHE719 4.8 27.9 1.0
CB A:VAL668 5.0 27.7 1.0

Reference:

W.D.Shipe, S.S.Sharik, J.C.Barrow, G.B.Mcgaughey, C.R.Theberge, J.M.Uslaner, Y.Yan, J.J.Renger, S.M.Smith, P.J.Coleman, C.D.Cox. Discovery and Optimization of A Series of Pyrimidine-Based Phosphodiesterase 10A (PDE10A) Inhibitors Through Fragment Screening, Structure-Based Design, and Parallel Synthesis. J.Med.Chem. V. 58 7888 2015.
ISSN: ISSN 0022-2623
PubMed: 26378882
DOI: 10.1021/ACS.JMEDCHEM.5B00983
Page generated: Fri Jul 26 05:51:23 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy