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Chlorine in PDB 5c37: Structure of the Beta-Ketoacyl Reductase Domain of Human Fatty Acid Synthase Bound to A Spiro-Imidazolone Inhibitor

Enzymatic activity of Structure of the Beta-Ketoacyl Reductase Domain of Human Fatty Acid Synthase Bound to A Spiro-Imidazolone Inhibitor

All present enzymatic activity of Structure of the Beta-Ketoacyl Reductase Domain of Human Fatty Acid Synthase Bound to A Spiro-Imidazolone Inhibitor:
1.1.1.100; 1.3.1.39; 2.3.1.38; 2.3.1.39; 2.3.1.41; 2.3.1.85; 4.2.1.59;

Protein crystallography data

The structure of Structure of the Beta-Ketoacyl Reductase Domain of Human Fatty Acid Synthase Bound to A Spiro-Imidazolone Inhibitor, PDB code: 5c37 was solved by C.Schubert, C.M.Milligan, K.Vo, B.Grasberger, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.00 / 2.30
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 94.080, 80.520, 96.530, 90.00, 116.90, 90.00
R / Rfree (%) 21 / 25.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of the Beta-Ketoacyl Reductase Domain of Human Fatty Acid Synthase Bound to A Spiro-Imidazolone Inhibitor (pdb code 5c37). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Structure of the Beta-Ketoacyl Reductase Domain of Human Fatty Acid Synthase Bound to A Spiro-Imidazolone Inhibitor, PDB code: 5c37:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 5c37

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Chlorine binding site 1 out of 3 in the Structure of the Beta-Ketoacyl Reductase Domain of Human Fatty Acid Synthase Bound to A Spiro-Imidazolone Inhibitor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the Beta-Ketoacyl Reductase Domain of Human Fatty Acid Synthase Bound to A Spiro-Imidazolone Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl2203

b:69.7
occ:1.00
HH12 A:ARG1470 2.6 59.7 1.0
HH22 A:ARG1470 2.6 62.1 1.0
HH12 A:ARG1461 2.7 51.3 1.0
O A:HOH2339 2.7 47.7 1.0
HH22 A:ARG1461 2.7 48.6 1.0
NH1 A:ARG1470 3.4 49.7 1.0
NH2 A:ARG1470 3.4 51.7 1.0
O A:HOH2348 3.5 48.5 1.0
NH1 A:ARG1461 3.5 42.8 1.0
NH2 A:ARG1461 3.5 40.5 1.0
O A:ASN1234 3.7 39.2 1.0
O A:ASN1467 3.8 57.5 1.0
CZ A:ARG1470 3.8 51.3 1.0
HH22 A:ARG1404 3.9 45.5 1.0
HB3 A:PRO1236 3.9 45.5 1.0
CZ A:ARG1461 4.0 41.3 1.0
HH11 A:ARG1470 4.1 59.7 1.0
HH21 A:ARG1470 4.1 62.1 1.0
HB2 A:ASN1467 4.1 66.6 1.0
HA A:PRO1236 4.1 44.6 1.0
HH11 A:ARG1461 4.1 51.3 1.0
HD3 A:PRO1236 4.2 42.6 1.0
HH21 A:ARG1461 4.2 48.6 1.0
HA A:ASN1467 4.3 66.5 1.0
C A:ASN1234 4.5 38.4 1.0
HG23 A:VAL1502 4.5 47.0 1.0
HG22 A:VAL1502 4.5 47.0 1.0
HA A:ASN1234 4.5 46.5 1.0
N A:PRO1236 4.6 35.5 1.0
NH2 A:ARG1404 4.6 37.9 1.0
CA A:PRO1236 4.7 37.1 1.0
C A:ASN1467 4.7 57.0 1.0
CB A:PRO1236 4.7 37.9 1.0
HH21 A:ARG1404 4.7 45.5 1.0
HG21 A:VAL1502 4.7 47.0 1.0
C A:MET1235 4.8 34.9 1.0
CB A:ASN1467 4.8 55.5 1.0
CG2 A:VAL1502 4.8 39.2 1.0
CA A:ASN1467 4.8 55.4 1.0
CD A:PRO1236 4.8 35.5 1.0
HB3 A:ASN1234 4.8 46.7 1.0
HB3 A:ASN1467 4.9 66.6 1.0
O A:MET1235 5.0 35.8 1.0

Chlorine binding site 2 out of 3 in 5c37

Go back to Chlorine Binding Sites List in 5c37
Chlorine binding site 2 out of 3 in the Structure of the Beta-Ketoacyl Reductase Domain of Human Fatty Acid Synthase Bound to A Spiro-Imidazolone Inhibitor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of the Beta-Ketoacyl Reductase Domain of Human Fatty Acid Synthase Bound to A Spiro-Imidazolone Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl2204

b:69.3
occ:1.00
HH22 C:ARG1461 2.6 60.8 1.0
HH12 C:ARG1461 2.7 61.4 1.0
O C:ASN1234 3.3 43.6 1.0
O C:HOH2334 3.3 44.4 1.0
NH2 C:ARG1461 3.4 50.7 1.0
NH1 C:ARG1461 3.5 51.1 1.0
HH12 C:ARG1470 3.6 62.8 1.0
HH22 C:ARG1470 3.7 64.7 1.0
HH22 C:ARG1404 3.8 59.3 1.0
CZ C:ARG1461 3.9 50.6 1.0
NH1 C:ARG1470 3.9 52.3 1.0
O C:ASN1467 4.0 59.5 1.0
NH2 C:ARG1470 4.0 53.9 1.0
HB2 C:ASN1467 4.0 75.0 1.0
C C:ASN1234 4.1 42.5 1.0
HH21 C:ARG1461 4.1 60.8 1.0
CZ C:ARG1470 4.1 52.6 1.0
HA C:ASN1234 4.1 50.1 1.0
HA C:PRO1236 4.2 69.5 1.0
HH11 C:ARG1461 4.2 61.4 1.0
HB3 C:PRO1236 4.3 70.8 1.0
HH11 C:ARG1470 4.4 62.8 1.0
HG22 C:VAL1502 4.4 52.1 1.0
HB3 C:ASN1234 4.4 48.8 1.0
HG23 C:VAL1502 4.4 52.1 1.0
NH2 C:ARG1404 4.5 49.4 1.0
HD3 C:PRO1236 4.5 66.8 1.0
HH21 C:ARG1470 4.5 64.7 1.0
HA C:ASN1467 4.5 72.7 1.0
HH21 C:ARG1404 4.6 59.3 1.0
HG21 C:VAL1502 4.6 52.1 1.0
CA C:ASN1234 4.6 41.7 1.0
C C:MET1235 4.6 55.0 1.0
N C:PRO1236 4.6 56.0 1.0
CG2 C:VAL1502 4.7 43.4 1.0
O C:MET1235 4.7 55.5 1.0
CA C:PRO1236 4.8 57.9 1.0
CB C:ASN1467 4.8 62.5 1.0
C C:ASN1467 4.9 60.1 1.0
N C:MET1235 5.0 51.7 1.0
NE C:ARG1470 5.0 51.8 1.0
CA C:ASN1467 5.0 60.6 1.0

Chlorine binding site 3 out of 3 in 5c37

Go back to Chlorine Binding Sites List in 5c37
Chlorine binding site 3 out of 3 in the Structure of the Beta-Ketoacyl Reductase Domain of Human Fatty Acid Synthase Bound to A Spiro-Imidazolone Inhibitor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of the Beta-Ketoacyl Reductase Domain of Human Fatty Acid Synthase Bound to A Spiro-Imidazolone Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl2205

b:77.6
occ:1.00
O C:HOH2424 2.4 63.7 1.0
O C:HOH2422 3.0 42.4 1.0
O C:HOH2332 3.2 43.0 1.0
HB3 C:TRP1511 3.3 48.0 1.0
HD2 C:HIS1122 3.4 46.1 1.0
HB2 C:TRP1511 3.5 48.0 1.0
HG22 C:VAL1496 3.6 52.1 1.0
CB C:TRP1511 3.7 40.0 1.0
O C:HOH2360 3.8 48.0 1.0
CG C:TRP1511 3.8 40.6 1.0
HA C:VAL1496 4.0 55.2 1.0
CD2 C:HIS1122 4.1 38.5 1.0
CD1 C:TRP1511 4.2 41.9 1.0
HD1 C:TRP1511 4.3 50.3 1.0
CD2 C:TRP1511 4.3 40.7 1.0
HG23 C:VAL1496 4.4 52.1 1.0
CG2 C:VAL1496 4.4 43.4 1.0
HE2 C:HIS1122 4.5 44.7 1.0
HB3 C:LYS1495 4.5 71.4 1.0
NE2 C:HIS1122 4.7 37.2 1.0
CA C:VAL1496 4.8 46.0 1.0
NE1 C:TRP1511 4.8 42.8 1.0
HE3 C:TRP1511 4.9 48.0 1.0
CE3 C:TRP1511 4.9 40.0 1.0
HB2 C:LYS1495 4.9 71.4 1.0
CE2 C:TRP1511 4.9 42.0 1.0
N C:VAL1496 5.0 47.1 1.0

Reference:

T.Lu, C.Schubert, M.D.Cummings, G.Bignan, P.Connolly, K.Smans, D.Ludovici, M.Parker, C.Meyer, C.Rocaboy, R.Alexander, B.Grasberger, S.De Breucker, N.Esser, E.Fraiponts, R.Gilissen, B.Janssens, D.Peeters, L.Van Nuffel, P.Vermeulen, J.Bischoff, L.Meerpoel. Design and Synthesis of A Series of Bioavailable Fatty Acid Synthase (Fasn) Kr Domain Inhibitors For Cancer Therapy To Be Published.
Page generated: Sat Dec 12 11:34:21 2020

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