Chlorine in PDB 5c3z: Crystal Structure of Human Ribokinase in Complex with Amppcp in C2 Spacegroup

All present enzymatic activity of Crystal Structure of Human Ribokinase in Complex with Amppcp in C2 Spacegroup:
2.7.1.15;

The structure of Crystal Structure of Human Ribokinase in Complex with Amppcp in C2 Spacegroup, PDB code: 5c3z was solved by J.Park, J.Chakrabarti, B.Singh, R.S.Gupta, M.S.Junop, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.90
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	142.557, 72.943, 91.864, 90.00, 114.81, 90.00
R / Rfree (%)	14.9 / 18.8

The structure of Crystal Structure of Human Ribokinase in Complex with Amppcp in C2 Spacegroup also contains other interesting chemical elements:

Sodium

(Na)

4 atoms

The binding sites of Chlorine atom in the Crystal Structure of Human Ribokinase in Complex with Amppcp in C2 Spacegroup (pdb code 5c3z). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Human Ribokinase in Complex with Amppcp in C2 Spacegroup, PDB code: 5c3z:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Crystal Structure of Human Ribokinase in Complex with Amppcp in C2 Spacegroup


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Ribokinase in Complex with Amppcp in C2 Spacegroup within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl404 b:51.5 occ:1.00 ND1 A:HIS45 3.0 41.9 1.0 O A:HOH727 3.1 44.7 1.0 O A:HOH517 3.4 42.2 1.0 N A:SER33 3.5 45.5 1.0 CB A:HIS45 3.7 38.9 1.0 CG A:HIS45 3.8 40.0 1.0 OG A:SER33 3.8 61.8 1.0 N A:HIS45 3.8 34.4 1.0 CA A:GLY44 3.9 34.0 1.0 CB A:SER33 3.9 54.2 1.0 C A:GLY44 3.9 34.5 1.0 O A:HIS43 3.9 43.1 1.0 C A:THR32 4.0 42.6 0.5 C A:THR32 4.0 42.8 0.5 CA A:THR32 4.1 38.6 0.5 CA A:THR32 4.1 38.9 0.5 CE1 A:HIS45 4.2 42.2 1.0 CA A:SER33 4.3 53.6 1.0 CA A:HIS45 4.4 37.5 1.0 O A:GLY44 4.5 36.9 1.0 OG1 A:THR32 4.6 42.3 0.5 O A:LEU31 4.6 33.8 1.0 C A:HIS43 4.7 38.7 1.0 N A:GLY44 4.7 34.8 1.0

Chlorine binding site 2 out of 3 in the Crystal Structure of Human Ribokinase in Complex with Amppcp in C2 Spacegroup


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Human Ribokinase in Complex with Amppcp in C2 Spacegroup within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl405 b:56.1 occ:1.00 N A:ASP186 3.5 35.5 1.0 CD1 A:ILE182 3.6 52.1 1.0 CE2 A:PHE189 3.7 31.0 1.0 CB A:ASP186 3.9 38.3 1.0 O A:HOH665 3.9 48.0 1.0 CD1 A:LEU185 4.1 37.4 1.0 CA A:LEU185 4.2 35.8 1.0 CB A:PRO157 4.3 40.7 1.0 CA A:ASP186 4.3 36.4 1.0 C A:LEU185 4.3 35.6 1.0 O A:HOH751 4.4 60.0 1.0 CD2 A:PHE189 4.4 31.0 1.0 CG A:PRO157 4.5 45.5 1.0 O A:ASP184 4.5 41.6 1.0 CZ A:PHE189 4.7 31.3 1.0 CG1 A:ILE182 4.8 44.9 1.0 CG A:LEU185 5.0 34.5 1.0

Chlorine binding site 3 out of 3 in the Crystal Structure of Human Ribokinase in Complex with Amppcp in C2 Spacegroup


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Human Ribokinase in Complex with Amppcp in C2 Spacegroup within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl404 b:41.7 occ:1.00 O B:HOH697 2.8 52.2 1.0 NH1 B:ARG168 3.0 35.2 1.0 CD B:ARG168 3.6 36.2 1.0 CB B:ARG168 4.0 34.4 1.0 CG B:ARG168 4.0 37.6 1.0 CZ B:ARG168 4.0 36.8 1.0 CD2 B:LEU192 4.2 34.9 1.0 O B:HOH702 4.3 48.9 1.0 NE B:ARG168 4.3 34.0 1.0 O B:HOH598 4.9 40.8 1.0

J.Park, J.Chakrabarti, B.Singh, R.S.Gupta, M.S.Junop. Crystal Structure of Human Ribokinase in Complex with Amppcp in C2 Spacegroup To Be Published.