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Chlorine in PDB 5c6j: Crystal Structure of Gadolinium Derivative of Hewl Solved Using Free- Electron Laser Radiation

Enzymatic activity of Crystal Structure of Gadolinium Derivative of Hewl Solved Using Free- Electron Laser Radiation

All present enzymatic activity of Crystal Structure of Gadolinium Derivative of Hewl Solved Using Free- Electron Laser Radiation:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Gadolinium Derivative of Hewl Solved Using Free- Electron Laser Radiation, PDB code: 5c6j was solved by L.Galli, T.R.M.Barends, S.-K.Son, T.A.White, A.Barty, S.Botha, S.Boutet, C.Caleman, R.B.Doak, M.H.Nanao, K.Nass, R.L.Shoeman, N.Timneanu, R.Santra, I.Schlichting, H.N.Chapman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.30 / 2.10
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.200, 79.200, 39.400, 90.00, 90.00, 90.00
R / Rfree (%) 20.4 / 27.2

Other elements in 5c6j:

The structure of Crystal Structure of Gadolinium Derivative of Hewl Solved Using Free- Electron Laser Radiation also contains other interesting chemical elements:

Gadolinium (Gd) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Gadolinium Derivative of Hewl Solved Using Free- Electron Laser Radiation (pdb code 5c6j). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Gadolinium Derivative of Hewl Solved Using Free- Electron Laser Radiation, PDB code: 5c6j:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 5c6j

Go back to Chlorine Binding Sites List in 5c6j
Chlorine binding site 1 out of 4 in the Crystal Structure of Gadolinium Derivative of Hewl Solved Using Free- Electron Laser Radiation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Gadolinium Derivative of Hewl Solved Using Free- Electron Laser Radiation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:22.4
occ:1.00
 OH A:TYR23 3.0 13.3 1.0
CE2 A:TYR23 3.7 14.2 1.0
CZ A:TYR23 3.8 14.0 1.0
CA A:GLY104 4.1 14.5 1.0
O A:ARG21 4.8 15.3 1.0
N A:GLY104 4.9 15.4 1.0
CD2 A:TYR23 4.9 13.9 1.0

Chlorine binding site 2 out of 4 in 5c6j

Go back to Chlorine Binding Sites List in 5c6j
Chlorine binding site 2 out of 4 in the Crystal Structure of Gadolinium Derivative of Hewl Solved Using Free- Electron Laser Radiation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Gadolinium Derivative of Hewl Solved Using Free- Electron Laser Radiation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:27.8
occ:1.00
 OG A:SER24 2.9 12.5 1.0
N A:GLY26 3.1 12.0 1.0
CA A:GLY26 3.5 11.8 1.0
CB A:SER24 3.6 12.8 1.0
CA A:GLN121 3.6 15.9 1.0
N A:GLN121 3.9 15.0 1.0
CB A:GLN121 4.0 17.5 1.0
N A:LEU25 4.1 12.3 1.0
CG2 A:VAL120 4.1 15.7 1.0
C A:VAL120 4.2 15.8 1.0
O A:VAL120 4.2 15.7 1.0
C A:SER24 4.3 12.3 1.0
C A:LEU25 4.3 12.5 1.0
CG A:GLN121 4.3 19.3 1.0
CG1 A:ILE124 4.4 20.4 1.0
CD1 A:ILE124 4.5 22.1 1.0
CA A:SER24 4.5 11.9 1.0
C A:GLY26 4.6 11.2 1.0
CA A:LEU25 4.6 12.8 1.0
N A:ASN27 4.7 10.9 1.0
O A:SER24 4.8 10.8 1.0
C A:GLN121 4.9 14.7 1.0
CB A:VAL120 5.0 15.5 1.0

Chlorine binding site 3 out of 4 in 5c6j

Go back to Chlorine Binding Sites List in 5c6j
Chlorine binding site 3 out of 4 in the Crystal Structure of Gadolinium Derivative of Hewl Solved Using Free- Electron Laser Radiation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Gadolinium Derivative of Hewl Solved Using Free- Electron Laser Radiation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:42.0
occ:1.00
 N A:THR69 3.1 21.8 1.0
O A:THR69 3.2 20.6 1.0
N A:ARG68 3.3 20.4 1.0
C A:GLY67 3.6 21.1 1.0
C A:THR69 3.6 22.7 1.0
N A:GLY67 3.6 19.2 1.0
CA A:GLY67 3.7 20.3 1.0
ND2 A:ASN65 3.7 22.3 1.0
OG A:SER72 3.7 25.2 1.0
CA A:THR69 3.9 19.9 1.0
C A:ARG68 4.1 21.1 1.0
CA A:ARG68 4.1 20.4 1.0
OD1 A:ASP66 4.3 15.6 1.0
CB A:THR69 4.3 18.2 1.0
O A:GLY67 4.3 21.9 1.0
N A:PRO70 4.5 28.1 1.0
C A:ASP66 4.7 17.8 1.0
CA A:PRO70 4.7 30.2 1.0
N A:ASP66 4.7 15.0 1.0
OG1 A:THR69 4.9 16.8 1.0
CG A:ASN65 5.0 22.5 1.0

Chlorine binding site 4 out of 4 in 5c6j

Go back to Chlorine Binding Sites List in 5c6j
Chlorine binding site 4 out of 4 in the Crystal Structure of Gadolinium Derivative of Hewl Solved Using Free- Electron Laser Radiation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Gadolinium Derivative of Hewl Solved Using Free- Electron Laser Radiation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:48.8
occ:1.00
 N A:ILE88 3.3 18.0 1.0
CG1 A:ILE88 3.6 16.8 1.0
CA A:ASP87 3.8 21.4 1.0
O A:SER86 3.8 23.0 1.0
C A:ASP87 4.0 19.1 1.0
CZ A:PHE3 4.0 18.7 1.0
OD1 A:ASP87 4.2 26.5 1.0
CB A:ILE88 4.3 17.4 1.0
CB A:ALA11 4.3 14.8 1.0
CA A:ILE88 4.3 18.0 1.0
CG2 A:ILE88 4.4 18.5 1.0
CD1 A:ILE88 4.4 16.5 1.0
NE2 A:HIS15 4.5 25.0 1.0
NH2 A:ARG14 4.6 29.3 1.0
CE2 A:PHE3 4.6 19.4 1.0
C A:SER86 4.7 19.7 1.0
N A:ASP87 4.7 20.6 1.0
CG A:ASP87 4.7 27.9 1.0
CB A:ASP87 4.8 24.3 1.0

Reference:

L.Galli, S.K.Son, T.R.Barends, T.A.White, A.Barty, S.Botha, S.Boutet, C.Caleman, R.B.Doak, M.H.Nanao, K.Nass, R.L.Shoeman, N.Timneanu, R.Santra, I.Schlichting, H.N.Chapman. Towards Phasing Using High X-Ray Intensity. Iucrj V. 2 627 2015.
ISSN: ESSN 2052-2525
PubMed: 26594370
DOI: 10.1107/S2052252515014049
Page generated: Sat Dec 12 11:34:27 2020

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