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Chlorine in PDB 5c6l: Crystal Structure of Gadolinium Derivative of Hewl Solved Using Intense Free-Electron Laser Radiation

Enzymatic activity of Crystal Structure of Gadolinium Derivative of Hewl Solved Using Intense Free-Electron Laser Radiation

All present enzymatic activity of Crystal Structure of Gadolinium Derivative of Hewl Solved Using Intense Free-Electron Laser Radiation:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Gadolinium Derivative of Hewl Solved Using Intense Free-Electron Laser Radiation, PDB code: 5c6l was solved by L.Galli, T.R.M.Barends, S.-K.Son, T.A.White, A.Barty, S.Botha, S.Boutet, C.Caleman, R.B.Doak, M.H.Nanao, K.Nass, R.L.Shoeman, N.Timneanu, R.Santra, I.Schlichting, H.N.Chapman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.30 / 2.10
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.200, 79.200, 39.400, 90.00, 90.00, 90.00
R / Rfree (%) 21.9 / 28

Other elements in 5c6l:

The structure of Crystal Structure of Gadolinium Derivative of Hewl Solved Using Intense Free-Electron Laser Radiation also contains other interesting chemical elements:

Gadolinium (Gd) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Gadolinium Derivative of Hewl Solved Using Intense Free-Electron Laser Radiation (pdb code 5c6l). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Gadolinium Derivative of Hewl Solved Using Intense Free-Electron Laser Radiation, PDB code: 5c6l:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 5c6l

Go back to Chlorine Binding Sites List in 5c6l
Chlorine binding site 1 out of 4 in the Crystal Structure of Gadolinium Derivative of Hewl Solved Using Intense Free-Electron Laser Radiation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Gadolinium Derivative of Hewl Solved Using Intense Free-Electron Laser Radiation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:20.4
occ:1.00
 OH A:TYR23 3.1 11.5 1.0
CE2 A:TYR23 3.7 12.2 1.0
CZ A:TYR23 3.8 11.8 1.0
CA A:GLY104 4.1 13.3 1.0
O A:ARG21 4.8 14.1 1.0
N A:GLY104 4.9 14.2 1.0
CD2 A:TYR23 4.9 12.0 1.0

Chlorine binding site 2 out of 4 in 5c6l

Go back to Chlorine Binding Sites List in 5c6l
Chlorine binding site 2 out of 4 in the Crystal Structure of Gadolinium Derivative of Hewl Solved Using Intense Free-Electron Laser Radiation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Gadolinium Derivative of Hewl Solved Using Intense Free-Electron Laser Radiation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:25.4
occ:1.00
 OG A:SER24 2.9 11.6 1.0
N A:GLY26 3.1 11.0 1.0
CA A:GLY26 3.5 10.7 1.0
CB A:SER24 3.6 11.6 1.0
CA A:GLN121 3.6 14.8 1.0
N A:GLN121 3.9 14.2 1.0
CB A:GLN121 4.0 16.2 1.0
CG2 A:VAL120 4.1 14.0 1.0
N A:LEU25 4.1 11.2 1.0
C A:VAL120 4.1 14.4 1.0
O A:VAL120 4.2 13.9 1.0
C A:SER24 4.3 11.3 1.0
C A:LEU25 4.3 11.5 1.0
CG A:GLN121 4.3 17.7 1.0
CG1 A:ILE124 4.4 18.2 1.0
CA A:SER24 4.5 10.9 1.0
C A:GLY26 4.5 10.2 1.0
CD1 A:ILE124 4.5 19.9 1.0
CA A:LEU25 4.7 11.8 1.0
N A:ASN27 4.7 9.9 1.0
O A:SER24 4.9 10.0 1.0
C A:GLN121 4.9 13.7 1.0
CB A:VAL120 4.9 14.2 1.0

Chlorine binding site 3 out of 4 in 5c6l

Go back to Chlorine Binding Sites List in 5c6l
Chlorine binding site 3 out of 4 in the Crystal Structure of Gadolinium Derivative of Hewl Solved Using Intense Free-Electron Laser Radiation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Gadolinium Derivative of Hewl Solved Using Intense Free-Electron Laser Radiation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:41.7
occ:1.00
 O A:THR69 3.2 19.2 1.0
N A:THR69 3.2 19.9 1.0
N A:ARG68 3.4 19.0 1.0
C A:GLY67 3.6 19.4 1.0
N A:GLY67 3.6 17.7 1.0
CA A:GLY67 3.6 18.9 1.0
C A:THR69 3.7 20.3 1.0
ND2 A:ASN65 3.7 19.5 1.0
OG A:SER72 3.7 22.1 1.0
CA A:THR69 3.9 18.1 1.0
C A:ARG68 4.1 19.4 1.0
CA A:ARG68 4.2 18.9 1.0
O A:GLY67 4.3 20.6 1.0
OD1 A:ASP66 4.3 14.8 1.0
CB A:THR69 4.3 16.4 1.0
N A:PRO70 4.5 24.9 1.0
N A:ASP66 4.7 13.7 1.0
C A:ASP66 4.7 16.1 1.0
CA A:PRO70 4.7 26.3 1.0
OG1 A:THR69 4.9 14.8 1.0
CG A:ASN65 5.0 19.7 1.0

Chlorine binding site 4 out of 4 in 5c6l

Go back to Chlorine Binding Sites List in 5c6l
Chlorine binding site 4 out of 4 in the Crystal Structure of Gadolinium Derivative of Hewl Solved Using Intense Free-Electron Laser Radiation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Gadolinium Derivative of Hewl Solved Using Intense Free-Electron Laser Radiation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:45.2
occ:1.00
 N A:ILE88 3.3 16.7 1.0
CG1 A:ILE88 3.6 15.8 1.0
CA A:ASP87 3.8 19.8 1.0
O A:SER86 3.8 21.2 1.0
C A:ASP87 4.0 17.7 1.0
CZ A:PHE3 4.0 17.4 1.0
OD1 A:ASP87 4.2 25.1 1.0
CB A:ALA11 4.3 14.3 1.0
CB A:ILE88 4.3 16.4 1.0
CA A:ILE88 4.3 16.9 1.0
CD1 A:ILE88 4.4 15.4 1.0
CG2 A:ILE88 4.5 17.3 1.0
CE2 A:PHE3 4.6 17.8 1.0
NE2 A:HIS15 4.6 23.4 1.0
NH2 A:ARG14 4.6 28.8 1.0
C A:SER86 4.7 18.4 1.0
N A:ASP87 4.7 19.0 1.0
CG A:ASP87 4.8 25.9 1.0
CB A:ASP87 4.8 22.5 1.0

Reference:

L.Galli, S.K.Son, T.R.Barends, T.A.White, A.Barty, S.Botha, S.Boutet, C.Caleman, R.B.Doak, M.H.Nanao, K.Nass, R.L.Shoeman, N.Timneanu, R.Santra, I.Schlichting, H.N.Chapman. Towards Phasing Using High X-Ray Intensity. Iucrj V. 2 627 2015.
ISSN: ESSN 2052-2525
PubMed: 26594370
DOI: 10.1107/S2052252515014049
Page generated: Sat Dec 12 11:34:29 2020

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