Atomistry » Chlorine » PDB 5c2e-5caj » 5c6l
Atomistry »
  Chlorine »
    PDB 5c2e-5caj »
      5c6l »

Chlorine in PDB 5c6l: Crystal Structure of Gadolinium Derivative of Hewl Solved Using Intense Free-Electron Laser Radiation

Enzymatic activity of Crystal Structure of Gadolinium Derivative of Hewl Solved Using Intense Free-Electron Laser Radiation

All present enzymatic activity of Crystal Structure of Gadolinium Derivative of Hewl Solved Using Intense Free-Electron Laser Radiation:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Gadolinium Derivative of Hewl Solved Using Intense Free-Electron Laser Radiation, PDB code: 5c6l was solved by L.Galli, T.R.M.Barends, S.-K.Son, T.A.White, A.Barty, S.Botha, S.Boutet, C.Caleman, R.B.Doak, M.H.Nanao, K.Nass, R.L.Shoeman, N.Timneanu, R.Santra, I.Schlichting, H.N.Chapman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.30 / 2.10
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.200, 79.200, 39.400, 90.00, 90.00, 90.00
R / Rfree (%) 21.9 / 28

Other elements in 5c6l:

The structure of Crystal Structure of Gadolinium Derivative of Hewl Solved Using Intense Free-Electron Laser Radiation also contains other interesting chemical elements:

Gadolinium (Gd) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Gadolinium Derivative of Hewl Solved Using Intense Free-Electron Laser Radiation (pdb code 5c6l). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Gadolinium Derivative of Hewl Solved Using Intense Free-Electron Laser Radiation, PDB code: 5c6l:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 5c6l

Go back to Chlorine Binding Sites List in 5c6l
Chlorine binding site 1 out of 4 in the Crystal Structure of Gadolinium Derivative of Hewl Solved Using Intense Free-Electron Laser Radiation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Gadolinium Derivative of Hewl Solved Using Intense Free-Electron Laser Radiation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:20.4
occ:1.00
OH A:TYR23 3.1 11.5 1.0
CE2 A:TYR23 3.7 12.2 1.0
CZ A:TYR23 3.8 11.8 1.0
CA A:GLY104 4.1 13.3 1.0
O A:ARG21 4.8 14.1 1.0
N A:GLY104 4.9 14.2 1.0
CD2 A:TYR23 4.9 12.0 1.0

Chlorine binding site 2 out of 4 in 5c6l

Go back to Chlorine Binding Sites List in 5c6l
Chlorine binding site 2 out of 4 in the Crystal Structure of Gadolinium Derivative of Hewl Solved Using Intense Free-Electron Laser Radiation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Gadolinium Derivative of Hewl Solved Using Intense Free-Electron Laser Radiation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:25.4
occ:1.00
OG A:SER24 2.9 11.6 1.0
N A:GLY26 3.1 11.0 1.0
CA A:GLY26 3.5 10.7 1.0
CB A:SER24 3.6 11.6 1.0
CA A:GLN121 3.6 14.8 1.0
N A:GLN121 3.9 14.2 1.0
CB A:GLN121 4.0 16.2 1.0
CG2 A:VAL120 4.1 14.0 1.0
N A:LEU25 4.1 11.2 1.0
C A:VAL120 4.1 14.4 1.0
O A:VAL120 4.2 13.9 1.0
C A:SER24 4.3 11.3 1.0
C A:LEU25 4.3 11.5 1.0
CG A:GLN121 4.3 17.7 1.0
CG1 A:ILE124 4.4 18.2 1.0
CA A:SER24 4.5 10.9 1.0
C A:GLY26 4.5 10.2 1.0
CD1 A:ILE124 4.5 19.9 1.0
CA A:LEU25 4.7 11.8 1.0
N A:ASN27 4.7 9.9 1.0
O A:SER24 4.9 10.0 1.0
C A:GLN121 4.9 13.7 1.0
CB A:VAL120 4.9 14.2 1.0

Chlorine binding site 3 out of 4 in 5c6l

Go back to Chlorine Binding Sites List in 5c6l
Chlorine binding site 3 out of 4 in the Crystal Structure of Gadolinium Derivative of Hewl Solved Using Intense Free-Electron Laser Radiation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Gadolinium Derivative of Hewl Solved Using Intense Free-Electron Laser Radiation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:41.7
occ:1.00
O A:THR69 3.2 19.2 1.0
N A:THR69 3.2 19.9 1.0
N A:ARG68 3.4 19.0 1.0
C A:GLY67 3.6 19.4 1.0
N A:GLY67 3.6 17.7 1.0
CA A:GLY67 3.6 18.9 1.0
C A:THR69 3.7 20.3 1.0
ND2 A:ASN65 3.7 19.5 1.0
OG A:SER72 3.7 22.1 1.0
CA A:THR69 3.9 18.1 1.0
C A:ARG68 4.1 19.4 1.0
CA A:ARG68 4.2 18.9 1.0
O A:GLY67 4.3 20.6 1.0
OD1 A:ASP66 4.3 14.8 1.0
CB A:THR69 4.3 16.4 1.0
N A:PRO70 4.5 24.9 1.0
N A:ASP66 4.7 13.7 1.0
C A:ASP66 4.7 16.1 1.0
CA A:PRO70 4.7 26.3 1.0
OG1 A:THR69 4.9 14.8 1.0
CG A:ASN65 5.0 19.7 1.0

Chlorine binding site 4 out of 4 in 5c6l

Go back to Chlorine Binding Sites List in 5c6l
Chlorine binding site 4 out of 4 in the Crystal Structure of Gadolinium Derivative of Hewl Solved Using Intense Free-Electron Laser Radiation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Gadolinium Derivative of Hewl Solved Using Intense Free-Electron Laser Radiation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:45.2
occ:1.00
N A:ILE88 3.3 16.7 1.0
CG1 A:ILE88 3.6 15.8 1.0
CA A:ASP87 3.8 19.8 1.0
O A:SER86 3.8 21.2 1.0
C A:ASP87 4.0 17.7 1.0
CZ A:PHE3 4.0 17.4 1.0
OD1 A:ASP87 4.2 25.1 1.0
CB A:ALA11 4.3 14.3 1.0
CB A:ILE88 4.3 16.4 1.0
CA A:ILE88 4.3 16.9 1.0
CD1 A:ILE88 4.4 15.4 1.0
CG2 A:ILE88 4.5 17.3 1.0
CE2 A:PHE3 4.6 17.8 1.0
NE2 A:HIS15 4.6 23.4 1.0
NH2 A:ARG14 4.6 28.8 1.0
C A:SER86 4.7 18.4 1.0
N A:ASP87 4.7 19.0 1.0
CG A:ASP87 4.8 25.9 1.0
CB A:ASP87 4.8 22.5 1.0

Reference:

L.Galli, S.K.Son, T.R.Barends, T.A.White, A.Barty, S.Botha, S.Boutet, C.Caleman, R.B.Doak, M.H.Nanao, K.Nass, R.L.Shoeman, N.Timneanu, R.Santra, I.Schlichting, H.N.Chapman. Towards Phasing Using High X-Ray Intensity. Iucrj V. 2 627 2015.
ISSN: ESSN 2052-2525
PubMed: 26594370
DOI: 10.1107/S2052252515014049
Page generated: Sat Jul 12 00:42:27 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy