Chlorine in PDB 5c9l: Crystal Structure of Native Pll Lectin From Photorhabdus Luminescens at 1.65 A Resolution

Protein crystallography data

The structure of Crystal Structure of Native Pll Lectin From Photorhabdus Luminescens at 1.65 A Resolution, PDB code: 5c9l was solved by A.Kumar, P.Sykorova, G.Demo, P.Dobes, P.Hyrsl, M.Wimmerova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.15 / 1.65
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 71.120, 87.677, 157.691, 90.00, 90.00, 90.00
R / Rfree (%) 14.1 / 15.9

Other elements in 5c9l:

The structure of Crystal Structure of Native Pll Lectin From Photorhabdus Luminescens at 1.65 A Resolution also contains other interesting chemical elements:

Mercury (Hg) 2 atoms
Calcium (Ca) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Native Pll Lectin From Photorhabdus Luminescens at 1.65 A Resolution (pdb code 5c9l). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Native Pll Lectin From Photorhabdus Luminescens at 1.65 A Resolution, PDB code: 5c9l:

Chlorine binding site 1 out of 1 in 5c9l

Go back to Chlorine Binding Sites List in 5c9l
Chlorine binding site 1 out of 1 in the Crystal Structure of Native Pll Lectin From Photorhabdus Luminescens at 1.65 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Native Pll Lectin From Photorhabdus Luminescens at 1.65 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl405

b:22.9
occ:0.80
HG A:HG401 2.0 17.5 0.3
O A:ALA175 2.6 12.2 1.0
O A:VAL127 2.8 10.4 1.0
OE2 A:GLU126 3.2 12.2 1.0
CB A:CYS128 3.5 14.4 1.0
CA A:CYS128 3.5 9.8 1.0
C A:ALA175 3.5 9.1 1.0
SG A:CYS128 3.6 22.7 1.0
O A:HOH645 3.6 24.0 1.0
C A:VAL127 3.6 8.4 1.0
CD A:GLU126 3.9 13.5 1.0
CB A:ALA175 3.9 11.2 1.0
N A:CYS128 3.9 8.2 1.0
CA A:ALA175 4.2 9.8 1.0
N A:ALA175 4.3 9.0 1.0
N A:HIS176 4.5 8.9 1.0
CG A:GLU126 4.5 10.7 1.0
OE1 A:GLU126 4.5 16.1 1.0
O A:HOH682 4.6 26.7 1.0
CA A:HIS176 4.7 8.1 1.0
CA A:VAL127 4.9 8.2 1.0
O A:HOH560 4.9 13.6 1.0
N A:VAL127 4.9 7.7 1.0
C A:CYS128 4.9 10.8 1.0
CE1 A:HIS80 4.9 10.1 1.0

Reference:

A.Kumar, P.Sykorova, G.Demo, P.Dobes, P.Hyrsl, M.Wimmerova. A Novel Fucose-Binding Lectin From Photorhabdus Luminescens (Pll) with An Unusual Heptabladed Beta-Propeller Tetrameric Structure. J.Biol.Chem. V. 291 25032 2016.
ISSN: ESSN 1083-351X
PubMed: 27758853
DOI: 10.1074/JBC.M115.693473
Page generated: Sat Dec 12 11:34:42 2020

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