Chlorine in PDB 5cai: Crystal Structure of A Putative Lipoprotein From the DUF903 Family (KPN_03160) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 at 2.30 A Resolution
Protein crystallography data
The structure of Crystal Structure of A Putative Lipoprotein From the DUF903 Family (KPN_03160) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 at 2.30 A Resolution, PDB code: 5cai
was solved by
Joint Center For Structural Genomics (Jcsg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.71 /
2.30
|
Space group
|
I 41 2 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
108.210,
108.210,
142.190,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
18.1 /
21.5
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of A Putative Lipoprotein From the DUF903 Family (KPN_03160) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 at 2.30 A Resolution
(pdb code 5cai). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 9 binding sites of Chlorine where determined in the
Crystal Structure of A Putative Lipoprotein From the DUF903 Family (KPN_03160) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 at 2.30 A Resolution, PDB code: 5cai:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Chlorine binding site 1 out
of 9 in 5cai
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Chlorine Binding Sites List in 5cai
Chlorine binding site 1 out
of 9 in the Crystal Structure of A Putative Lipoprotein From the DUF903 Family (KPN_03160) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 at 2.30 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of A Putative Lipoprotein From the DUF903 Family (KPN_03160) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 at 2.30 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl101
b:60.1
occ:1.00
|
O
|
A:HOH215
|
3.1
|
41.0
|
1.0
|
O
|
F:HOH203
|
3.2
|
36.4
|
1.0
|
N
|
A:ASN46
|
3.2
|
21.9
|
1.0
|
ND2
|
A:ASN46
|
3.4
|
19.0
|
1.0
|
CG
|
A:ASN46
|
3.6
|
32.9
|
1.0
|
CB
|
A:ASN46
|
3.8
|
19.9
|
1.0
|
CA
|
A:ASP45
|
3.8
|
19.7
|
1.0
|
OD2
|
A:ASP45
|
3.9
|
32.9
|
1.0
|
C
|
A:ASP45
|
4.0
|
24.5
|
1.0
|
NE2
|
A:GLN43
|
4.1
|
69.1
|
0.5
|
CA
|
A:ASN46
|
4.1
|
22.1
|
1.0
|
CG
|
A:ASP45
|
4.1
|
27.6
|
1.0
|
OD1
|
A:ASN46
|
4.1
|
30.8
|
1.0
|
OD1
|
F:ASP47
|
4.3
|
31.0
|
1.0
|
O
|
A:THR44
|
4.3
|
27.7
|
1.0
|
CB
|
A:ASP45
|
4.5
|
21.0
|
1.0
|
OE1
|
C:GLN43
|
4.5
|
63.8
|
1.0
|
OD1
|
A:ASP45
|
4.6
|
27.8
|
1.0
|
N
|
A:ASP45
|
4.9
|
20.1
|
1.0
|
NZ
|
E:LYS41
|
4.9
|
33.9
|
1.0
|
O
|
A:HOH216
|
5.0
|
55.0
|
1.0
|
|
Chlorine binding site 2 out
of 9 in 5cai
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Chlorine Binding Sites List in 5cai
Chlorine binding site 2 out
of 9 in the Crystal Structure of A Putative Lipoprotein From the DUF903 Family (KPN_03160) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 at 2.30 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of A Putative Lipoprotein From the DUF903 Family (KPN_03160) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 at 2.30 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl102
b:66.3
occ:1.00
|
NH1
|
A:ARG65
|
3.2
|
25.9
|
1.0
|
O
|
A:HOH223
|
3.2
|
34.2
|
1.0
|
O
|
B:HOH229
|
3.4
|
35.7
|
1.0
|
O
|
B:HOH203
|
3.8
|
45.3
|
1.0
|
OG
|
A:SER66
|
3.8
|
50.6
|
1.0
|
CD
|
A:ARG65
|
3.8
|
22.2
|
1.0
|
CB
|
A:ARG65
|
3.9
|
24.0
|
1.0
|
O
|
A:HOH231
|
4.1
|
57.5
|
1.0
|
CG
|
A:ARG65
|
4.3
|
22.7
|
1.0
|
CZ
|
A:ARG65
|
4.3
|
39.6
|
1.0
|
N
|
A:SER66
|
4.4
|
28.7
|
1.0
|
NE
|
A:ARG65
|
4.5
|
28.8
|
1.0
|
O
|
E:HOH246
|
4.8
|
57.3
|
1.0
|
C
|
A:ARG65
|
4.8
|
31.0
|
1.0
|
O
|
A:HOH221
|
4.9
|
35.8
|
1.0
|
CA
|
A:ARG65
|
4.9
|
24.8
|
1.0
|
O
|
A:HOH213
|
5.0
|
24.6
|
1.0
|
CA
|
A:SER66
|
5.0
|
30.3
|
1.0
|
CB
|
A:SER66
|
5.0
|
34.9
|
1.0
|
|
Chlorine binding site 3 out
of 9 in 5cai
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Chlorine Binding Sites List in 5cai
Chlorine binding site 3 out
of 9 in the Crystal Structure of A Putative Lipoprotein From the DUF903 Family (KPN_03160) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 at 2.30 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of A Putative Lipoprotein From the DUF903 Family (KPN_03160) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 at 2.30 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl101
b:69.7
occ:1.00
|
O
|
C:HOH205
|
3.1
|
42.0
|
1.0
|
N
|
B:ASN46
|
3.5
|
21.4
|
1.0
|
O
|
B:HOH211
|
3.5
|
35.6
|
1.0
|
ND2
|
B:ASN46
|
3.5
|
22.8
|
1.0
|
CG
|
B:ASN46
|
3.8
|
34.9
|
1.0
|
NE2
|
D:GLN43
|
4.0
|
62.1
|
0.5
|
CA
|
B:ASP45
|
4.0
|
20.0
|
1.0
|
CB
|
B:ASN46
|
4.0
|
24.9
|
1.0
|
OD2
|
B:ASP45
|
4.2
|
28.4
|
1.0
|
OD1
|
C:ASP47
|
4.2
|
29.4
|
1.0
|
C
|
B:ASP45
|
4.3
|
23.0
|
1.0
|
OE1
|
D:GLN43
|
4.3
|
62.0
|
0.5
|
CD
|
D:GLN43
|
4.3
|
65.8
|
0.5
|
OD1
|
B:ASN46
|
4.3
|
31.5
|
1.0
|
O
|
B:THR44
|
4.4
|
28.8
|
1.0
|
O
|
B:HOH205
|
4.4
|
41.6
|
1.0
|
CA
|
B:ASN46
|
4.4
|
22.4
|
1.0
|
CG
|
B:ASP45
|
4.4
|
27.8
|
1.0
|
OE1
|
D:GLN43
|
4.6
|
63.8
|
0.5
|
CB
|
B:ASP45
|
4.7
|
21.6
|
1.0
|
OD1
|
B:ASP45
|
4.9
|
29.3
|
1.0
|
N
|
B:ASP45
|
5.0
|
21.0
|
1.0
|
OE1
|
B:GLN43
|
5.0
|
58.3
|
1.0
|
O
|
B:HOH208
|
5.0
|
42.8
|
1.0
|
|
Chlorine binding site 4 out
of 9 in 5cai
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Chlorine Binding Sites List in 5cai
Chlorine binding site 4 out
of 9 in the Crystal Structure of A Putative Lipoprotein From the DUF903 Family (KPN_03160) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 at 2.30 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of A Putative Lipoprotein From the DUF903 Family (KPN_03160) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 at 2.30 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl102
b:71.2
occ:1.00
|
O
|
B:HOH229
|
3.0
|
35.7
|
1.0
|
NH1
|
B:ARG65
|
3.1
|
23.7
|
1.0
|
CB
|
B:ARG65
|
3.9
|
19.1
|
1.0
|
CD
|
B:ARG65
|
3.9
|
25.5
|
1.0
|
CZ
|
B:ARG65
|
4.2
|
42.4
|
1.0
|
CG
|
B:ARG65
|
4.3
|
25.4
|
1.0
|
O
|
A:HOH231
|
4.4
|
57.5
|
1.0
|
N
|
B:SER66
|
4.5
|
26.3
|
1.0
|
NE
|
B:ARG65
|
4.5
|
34.3
|
1.0
|
O
|
B:HOH203
|
4.6
|
45.3
|
1.0
|
O
|
B:HOH219
|
4.8
|
29.9
|
1.0
|
CA
|
B:ARG65
|
4.9
|
21.4
|
1.0
|
C
|
B:ARG65
|
4.9
|
28.4
|
1.0
|
OD1
|
B:ASN64
|
4.9
|
46.1
|
1.0
|
CB
|
B:SER66
|
4.9
|
31.8
|
1.0
|
|
Chlorine binding site 5 out
of 9 in 5cai
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Chlorine Binding Sites List in 5cai
Chlorine binding site 5 out
of 9 in the Crystal Structure of A Putative Lipoprotein From the DUF903 Family (KPN_03160) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 at 2.30 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of A Putative Lipoprotein From the DUF903 Family (KPN_03160) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 at 2.30 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl101
b:74.2
occ:1.00
|
N
|
C:ASN46
|
3.0
|
21.6
|
1.0
|
O
|
B:HOH204
|
3.1
|
37.9
|
1.0
|
O
|
C:HOH204
|
3.4
|
34.8
|
1.0
|
ND2
|
C:ASN46
|
3.5
|
21.7
|
1.0
|
CG
|
C:ASN46
|
3.5
|
36.1
|
1.0
|
CB
|
C:ASN46
|
3.7
|
27.1
|
1.0
|
CA
|
C:ASP45
|
3.7
|
20.2
|
1.0
|
C
|
C:ASP45
|
3.9
|
24.9
|
1.0
|
OD2
|
C:ASP45
|
3.9
|
32.5
|
1.0
|
CA
|
C:ASN46
|
4.0
|
22.3
|
1.0
|
OD1
|
C:ASN46
|
4.0
|
34.9
|
1.0
|
CG
|
C:ASP45
|
4.1
|
24.6
|
1.0
|
OD1
|
B:ASP47
|
4.1
|
36.8
|
1.0
|
O
|
C:THR44
|
4.2
|
23.5
|
1.0
|
NE2
|
A:GLN43
|
4.3
|
60.4
|
0.5
|
OE1
|
A:GLN43
|
4.4
|
54.9
|
0.5
|
CB
|
C:ASP45
|
4.4
|
21.0
|
1.0
|
OD1
|
C:ASP45
|
4.5
|
21.6
|
1.0
|
CD
|
A:GLN43
|
4.6
|
62.1
|
0.5
|
O
|
C:HOH208
|
4.7
|
49.6
|
1.0
|
N
|
C:ASP45
|
4.7
|
20.9
|
1.0
|
C
|
C:THR44
|
4.9
|
24.1
|
1.0
|
NZ
|
D:LYS41
|
4.9
|
30.6
|
1.0
|
N
|
C:ASP47
|
5.0
|
22.5
|
1.0
|
|
Chlorine binding site 6 out
of 9 in 5cai
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Chlorine Binding Sites List in 5cai
Chlorine binding site 6 out
of 9 in the Crystal Structure of A Putative Lipoprotein From the DUF903 Family (KPN_03160) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 at 2.30 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of A Putative Lipoprotein From the DUF903 Family (KPN_03160) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 at 2.30 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl101
b:63.5
occ:1.00
|
N
|
D:ASN46
|
3.2
|
19.9
|
1.0
|
ND2
|
D:ASN46
|
3.5
|
19.9
|
1.0
|
O
|
D:HOH204
|
3.5
|
37.3
|
1.0
|
CG
|
D:ASN46
|
3.6
|
34.0
|
1.0
|
CA
|
D:ASP45
|
3.7
|
19.3
|
1.0
|
CB
|
D:ASN46
|
3.9
|
24.3
|
1.0
|
C
|
D:ASP45
|
3.9
|
22.8
|
1.0
|
OD2
|
D:ASP45
|
4.0
|
28.7
|
1.0
|
OD1
|
D:ASN46
|
4.0
|
31.3
|
1.0
|
O
|
D:THR44
|
4.0
|
23.2
|
1.0
|
CA
|
D:ASN46
|
4.2
|
20.7
|
1.0
|
CG
|
D:ASP45
|
4.2
|
20.9
|
1.0
|
OE1
|
B:GLN43
|
4.3
|
58.3
|
1.0
|
OE1
|
D:GLN43
|
4.5
|
63.8
|
0.5
|
CB
|
D:ASP45
|
4.5
|
20.4
|
1.0
|
OD1
|
D:ASP45
|
4.6
|
21.4
|
1.0
|
O
|
B:HOH208
|
4.6
|
42.8
|
1.0
|
N
|
D:ASP45
|
4.7
|
18.7
|
1.0
|
C
|
D:THR44
|
4.8
|
22.5
|
1.0
|
CD
|
D:GLN43
|
5.0
|
63.8
|
0.5
|
|
Chlorine binding site 7 out
of 9 in 5cai
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Chlorine Binding Sites List in 5cai
Chlorine binding site 7 out
of 9 in the Crystal Structure of A Putative Lipoprotein From the DUF903 Family (KPN_03160) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 at 2.30 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Crystal Structure of A Putative Lipoprotein From the DUF903 Family (KPN_03160) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 at 2.30 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl101
b:70.6
occ:1.00
|
O
|
E:HOH214
|
2.9
|
50.7
|
1.0
|
N
|
E:ASN46
|
3.2
|
18.6
|
1.0
|
ND2
|
E:ASN46
|
3.3
|
19.2
|
1.0
|
CG
|
E:ASN46
|
3.5
|
34.4
|
1.0
|
CA
|
E:ASP45
|
3.8
|
18.5
|
1.0
|
CB
|
E:ASN46
|
3.8
|
18.3
|
1.0
|
OD2
|
E:ASP45
|
4.0
|
28.0
|
1.0
|
C
|
E:ASP45
|
4.0
|
21.6
|
1.0
|
OD1
|
E:ASN46
|
4.1
|
26.5
|
1.0
|
CA
|
E:ASN46
|
4.1
|
18.4
|
1.0
|
CG
|
E:ASP45
|
4.2
|
22.8
|
1.0
|
NE2
|
F:GLN43
|
4.2
|
52.9
|
0.5
|
O
|
E:THR44
|
4.2
|
25.6
|
1.0
|
OE1
|
F:GLN43
|
4.2
|
57.8
|
0.5
|
CD
|
F:GLN43
|
4.4
|
62.1
|
0.5
|
CB
|
E:ASP45
|
4.5
|
20.1
|
1.0
|
OE1
|
F:GLN43
|
4.5
|
23.3
|
0.5
|
OD1
|
E:ASP45
|
4.6
|
25.5
|
1.0
|
N
|
E:ASP45
|
4.8
|
20.1
|
1.0
|
O
|
F:HOH213
|
4.8
|
49.8
|
1.0
|
OG
|
E:SER52
|
4.9
|
23.5
|
0.5
|
C
|
E:THR44
|
4.9
|
24.7
|
1.0
|
OE1
|
E:GLN43
|
4.9
|
55.2
|
1.0
|
O
|
F:HOH244
|
5.0
|
49.5
|
1.0
|
|
Chlorine binding site 8 out
of 9 in 5cai
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Chlorine Binding Sites List in 5cai
Chlorine binding site 8 out
of 9 in the Crystal Structure of A Putative Lipoprotein From the DUF903 Family (KPN_03160) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 at 2.30 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Crystal Structure of A Putative Lipoprotein From the DUF903 Family (KPN_03160) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 at 2.30 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Cl101
b:69.2
occ:1.00
|
ND2
|
F:ASN46
|
3.5
|
21.4
|
1.0
|
N
|
F:ASN46
|
3.8
|
18.0
|
1.0
|
CG
|
F:ASN46
|
3.9
|
33.0
|
1.0
|
OE1
|
E:GLN43
|
4.0
|
55.2
|
1.0
|
O
|
F:THR44
|
4.0
|
22.4
|
1.0
|
O
|
A:HOH202
|
4.0
|
42.4
|
1.0
|
CA
|
F:ASP45
|
4.1
|
19.2
|
1.0
|
CD
|
F:GLN43
|
4.1
|
34.4
|
0.5
|
OE1
|
F:GLN43
|
4.2
|
57.8
|
0.5
|
OE1
|
F:GLN43
|
4.2
|
23.3
|
0.5
|
OD1
|
F:ASN46
|
4.2
|
31.0
|
1.0
|
O
|
F:HOH225
|
4.3
|
58.7
|
1.0
|
NE2
|
F:GLN43
|
4.3
|
34.2
|
0.5
|
CB
|
F:ASN46
|
4.4
|
23.0
|
1.0
|
CG
|
F:GLN43
|
4.5
|
24.6
|
0.5
|
C
|
F:ASP45
|
4.5
|
22.0
|
1.0
|
OD2
|
F:ASP45
|
4.6
|
29.0
|
1.0
|
CA
|
F:ASN46
|
4.8
|
19.2
|
1.0
|
CG
|
F:ASP45
|
4.8
|
20.9
|
1.0
|
C
|
F:THR44
|
4.8
|
23.1
|
1.0
|
OD1
|
A:ASP47
|
4.9
|
30.7
|
1.0
|
N
|
F:ASP45
|
4.9
|
19.2
|
1.0
|
CB
|
F:ASP45
|
5.0
|
20.2
|
1.0
|
|
Chlorine binding site 9 out
of 9 in 5cai
Go back to
Chlorine Binding Sites List in 5cai
Chlorine binding site 9 out
of 9 in the Crystal Structure of A Putative Lipoprotein From the DUF903 Family (KPN_03160) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 at 2.30 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of Crystal Structure of A Putative Lipoprotein From the DUF903 Family (KPN_03160) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 at 2.30 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Cl102
b:77.5
occ:1.00
|
O
|
F:HOH239
|
3.1
|
32.3
|
1.0
|
NH1
|
F:ARG65
|
3.1
|
28.4
|
1.0
|
CD
|
F:ARG65
|
3.9
|
17.5
|
1.0
|
O
|
F:HOH245
|
4.0
|
48.0
|
1.0
|
OG
|
F:SER66
|
4.0
|
40.2
|
1.0
|
CB
|
F:ARG65
|
4.1
|
17.8
|
1.0
|
CZ
|
F:ARG65
|
4.3
|
32.6
|
1.0
|
CG
|
F:ARG65
|
4.4
|
22.1
|
1.0
|
NE
|
F:ARG65
|
4.5
|
24.9
|
1.0
|
N
|
F:SER66
|
4.7
|
21.4
|
1.0
|
O
|
F:HOH238
|
4.8
|
22.5
|
1.0
|
|
Reference:
Joint Center For Structural Genomics (Jcsg),
Joint Center For Structural Genomics (Jcsg).
N/A N/A.
Page generated: Fri Jul 26 06:00:18 2024
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