Atomistry » Chlorine » PDB 5cai-5cmt » 5cir
Atomistry »
  Chlorine »
    PDB 5cai-5cmt »
      5cir »

Chlorine in PDB 5cir: Crystal Structure of Death Receptor 4 (DR4; TNFFRSF10A) Bound to Trail (TNFSF10)

Protein crystallography data

The structure of Crystal Structure of Death Receptor 4 (DR4; TNFFRSF10A) Bound to Trail (TNFSF10), PDB code: 5cir was solved by S.Sheriff, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.60 / 3.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 84.600, 87.600, 107.700, 90.00, 90.00, 90.00
R / Rfree (%) 17.7 / 21.6

Other elements in 5cir:

The structure of Crystal Structure of Death Receptor 4 (DR4; TNFFRSF10A) Bound to Trail (TNFSF10) also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Death Receptor 4 (DR4; TNFFRSF10A) Bound to Trail (TNFSF10) (pdb code 5cir). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Death Receptor 4 (DR4; TNFFRSF10A) Bound to Trail (TNFSF10), PDB code: 5cir:

Chlorine binding site 1 out of 1 in 5cir

Go back to Chlorine Binding Sites List in 5cir
Chlorine binding site 1 out of 1 in the Crystal Structure of Death Receptor 4 (DR4; TNFFRSF10A) Bound to Trail (TNFSF10)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Death Receptor 4 (DR4; TNFFRSF10A) Bound to Trail (TNFSF10) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl301

b:39.4
occ:1.00
ZN A:ZN301 2.2 37.6 1.0
SG B:CYS230 3.3 25.2 1.0
CB B:CYS230 3.5 23.2 1.0
CB A:CYS230 3.5 22.0 1.0
SG A:CYS230 3.5 25.0 1.0
SG D:CYS230 3.6 26.6 1.0
CB D:CYS230 3.6 23.6 1.0
CA A:CYS230 3.6 22.8 1.0
CA B:CYS230 3.7 24.8 1.0
CA D:CYS230 3.8 24.8 1.0
N A:CYS230 4.4 23.6 1.0
N D:CYS230 4.5 24.9 1.0
N B:CYS230 4.6 25.3 1.0
C A:CYS230 4.8 28.4 1.0
C B:CYS230 4.9 33.2 1.0
OH B:TYR240 4.9 34.4 1.0

Reference:

V.Ramamurthy, A.P.Yamniuk, E.J.Lawrence, W.Yong, L.A.Schneeweis, L.Cheng, M.Murdock, M.J.Corbett, M.L.Doyle, S.Sheriff. The Structure of the Death Receptor 4-Tnf-Related Apoptosis-Inducing Ligand (DR4-Trail) Complex. Acta Crystallogr F Struct V. 71 1273 2015BIOL Commun.
ISSN: ESSN 2053-230X
PubMed: 26457518
DOI: 10.1107/S2053230X15016416
Page generated: Sat Dec 12 11:35:21 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy