Chlorine in PDB 5cmt: Fic Protein From Neisseria Meningitidis (Nmfic) Mutant E156R Y183F in Dimeric Form

Protein crystallography data

The structure of Fic Protein From Neisseria Meningitidis (Nmfic) Mutant E156R Y183F in Dimeric Form, PDB code: 5cmt was solved by F.V.Stanger, T.Schirmer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.22 / 0.99
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 35.375, 50.697, 129.778, 90.00, 90.00, 90.00
R / Rfree (%) 13.4 / 15.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Fic Protein From Neisseria Meningitidis (Nmfic) Mutant E156R Y183F in Dimeric Form (pdb code 5cmt). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Fic Protein From Neisseria Meningitidis (Nmfic) Mutant E156R Y183F in Dimeric Form, PDB code: 5cmt:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 5cmt

Go back to Chlorine Binding Sites List in 5cmt
Chlorine binding site 1 out of 3 in the Fic Protein From Neisseria Meningitidis (Nmfic) Mutant E156R Y183F in Dimeric Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Fic Protein From Neisseria Meningitidis (Nmfic) Mutant E156R Y183F in Dimeric Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:60.1
occ:0.00
O A:HOH511 2.6 27.1 1.0
O A:HOH537 2.7 21.0 1.0
O A:HOH499 3.6 22.4 1.0
CB A:ALA98 3.8 7.1 1.0
O A:HOH542 3.9 30.0 1.0
CE A:MET88 4.1 7.9 1.0
O A:HOH374 4.8 7.0 1.0
O A:HOH322 4.9 10.3 1.0

Chlorine binding site 2 out of 3 in 5cmt

Go back to Chlorine Binding Sites List in 5cmt
Chlorine binding site 2 out of 3 in the Fic Protein From Neisseria Meningitidis (Nmfic) Mutant E156R Y183F in Dimeric Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Fic Protein From Neisseria Meningitidis (Nmfic) Mutant E156R Y183F in Dimeric Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:39.5
occ:0.00
O A:HOH396 2.7 20.1 1.0
O A:HOH347 3.0 13.9 1.0
O A:HOH426 3.6 19.9 1.0
O A:HOH543 4.0 18.7 1.0
CA A:ALA73 4.5 6.4 1.0
O A:HOH368 4.5 22.4 1.0
CG2 A:ILE105 4.5 6.6 1.0
OH A:TYR77 4.7 7.2 1.0
N A:ALA73 4.9 6.5 1.0
O A:ARG71 4.9 8.3 1.0
CB A:ALA73 4.9 7.0 1.0

Chlorine binding site 3 out of 3 in 5cmt

Go back to Chlorine Binding Sites List in 5cmt
Chlorine binding site 3 out of 3 in the Fic Protein From Neisseria Meningitidis (Nmfic) Mutant E156R Y183F in Dimeric Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Fic Protein From Neisseria Meningitidis (Nmfic) Mutant E156R Y183F in Dimeric Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:5.1
occ:0.00
N A:GLY114 3.1 5.0 1.0
NE A:ARG115 3.2 7.7 1.0
N A:ARG115 3.2 4.8 1.0
O A:HOH481 3.3 12.2 1.0
C A:GLY112 3.4 5.6 1.0
CA A:GLY112 3.4 6.8 1.0
NH2 A:ARG115 3.5 10.0 1.0
O A:HOH377 3.5 14.6 1.0
N A:ASN113 3.5 5.1 1.0
CD A:GLU186 3.5 8.6 1.0
CG A:GLU186 3.6 8.4 1.0
CA A:GLY114 3.6 5.1 1.0
OE1 A:GLU186 3.7 11.4 1.0
O A:HOH380 3.7 14.2 1.0
N A:GLY112 3.8 6.7 1.0
CZ A:ARG115 3.8 8.1 1.0
OE2 A:GLU186 3.8 9.1 1.0
O A:GLY112 3.9 6.3 1.0
CG A:ARG115 3.9 7.0 1.0
O A:HOH468 3.9 10.6 1.0
C A:GLY114 4.0 5.1 1.0
C A:ASN113 4.0 4.8 1.0
CB A:ARG115 4.1 6.1 1.0
CD A:ARG115 4.1 7.5 1.0
CA A:ARG115 4.3 5.1 1.0
CA A:ASN113 4.3 5.1 1.0
CB A:GLU186 4.5 9.6 1.0
O A:ASN113 4.9 5.3 1.0

Reference:

F.V.Stanger, B.M.Burmann, A.Harms, H.Aragao, A.Mazur, T.Sharpe, C.Dehio, S.Hiller, T.Schirmer. Intrinsic Regulation of Fic-Domain Amp-Transferases By Oligomerization and Automodification. Proc.Natl.Acad.Sci.Usa V. 113 E529 2016.
ISSN: ESSN 1091-6490
PubMed: 26787847
DOI: 10.1073/PNAS.1516930113
Page generated: Sat Dec 12 11:35:31 2020

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