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Chlorine in PDB 5cnr: Crystal Structure-Guided Design of Self-Assembling Rna Nano Triangles

Protein crystallography data

The structure of Crystal Structure-Guided Design of Self-Assembling Rna Nano Triangles, PDB code: 5cnr was solved by M.Boerneke, S.Dibrov, T.Hermann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.40 / 2.59
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 59.934, 59.934, 262.622, 90.00, 90.00, 120.00
R / Rfree (%) 19.3 / 24.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure-Guided Design of Self-Assembling Rna Nano Triangles (pdb code 5cnr). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure-Guided Design of Self-Assembling Rna Nano Triangles, PDB code: 5cnr:

Chlorine binding site 1 out of 1 in 5cnr

Go back to Chlorine Binding Sites List in 5cnr
Chlorine binding site 1 out of 1 in the Crystal Structure-Guided Design of Self-Assembling Rna Nano Triangles


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure-Guided Design of Self-Assembling Rna Nano Triangles within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl101

b:0.7
occ:1.00
N6 A:A11 3.9 0.4 1.0
N1 B:G40 4.5 0.6 1.0
C2 B:G40 4.6 0.3 1.0
C6 B:G40 4.7 0.9 1.0
N3 B:G40 4.8 0.9 1.0
N1 A:A11 4.9 0.7 1.0
C5 B:G40 4.9 96.9 1.0
C2 B:A39 4.9 0.5 1.0
C6 A:A11 4.9 1.0 1.0
C4 B:G40 4.9 0.6 1.0
N2 B:G40 5.0 0.9 1.0

Reference:

M.A.Boerneke, S.M.Dibrov, T.Hermann. Crystal-Structure-Guided Design of Self-Assembling Rna Nanotriangles. Angew.Chem.Int.Ed.Engl. V. 55 4097 2016.
ISSN: ESSN 1521-3773
PubMed: 26914842
DOI: 10.1002/ANIE.201600233
Page generated: Sat Jul 12 00:52:53 2025

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