Chlorine in PDB 5cse: Streptavidin-S112Y-K121E Complexed with Palladium-Containing Biotin Ligand

The structure of Streptavidin-S112Y-K121E Complexed with Palladium-Containing Biotin Ligand, PDB code: 5cse was solved by A.D.Finke, L.Vera, M.Marsh, A.Chatterjee, T.R.Ward, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.62 / 1.79
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	81.368, 81.460, 90.811, 90.00, 90.00, 90.00
R / Rfree (%)	22.3 / 25.6

The structure of Streptavidin-S112Y-K121E Complexed with Palladium-Containing Biotin Ligand also contains other interesting chemical elements:

Palladium

(Pd)

2 atoms

The binding sites of Chlorine atom in the Streptavidin-S112Y-K121E Complexed with Palladium-Containing Biotin Ligand (pdb code 5cse). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Streptavidin-S112Y-K121E Complexed with Palladium-Containing Biotin Ligand, PDB code: 5cse:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the Streptavidin-S112Y-K121E Complexed with Palladium-Containing Biotin Ligand


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Streptavidin-S112Y-K121E Complexed with Palladium-Containing Biotin Ligand within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl201 b:0.6 occ:1.00 CL A:SVP201 0.0 0.6 1.0 PD A:SVP201 2.4 53.9 1.0 C26 A:SVP201 3.3 48.0 1.0 C24 A:SVP201 3.3 62.0 1.0 C23 A:SVP201 3.6 44.5 1.0 P11 A:SVP201 3.8 49.0 1.0 C09 A:SVP201 3.9 32.8 1.0 ND2 A:ASN49 4.2 24.1 1.0 C10 A:SVP201 4.4 31.8 1.0 CB A:ASN49 4.5 20.7 1.0 CG A:ASN49 4.8 28.6 1.0

Chlorine binding site 2 out of 4 in the Streptavidin-S112Y-K121E Complexed with Palladium-Containing Biotin Ligand


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Streptavidin-S112Y-K121E Complexed with Palladium-Containing Biotin Ligand within 5.0Å range:

Chlorine binding site 3 out of 4 in the Streptavidin-S112Y-K121E Complexed with Palladium-Containing Biotin Ligand


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Streptavidin-S112Y-K121E Complexed with Palladium-Containing Biotin Ligand within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl201 b:81.0 occ:1.00 CL B:SVP201 0.0 81.0 1.0 PD B:SVP201 2.4 53.4 1.0 C24 B:SVP201 3.3 59.9 1.0 C26 B:SVP201 3.4 53.2 1.0 C23 B:SVP201 3.6 51.2 1.0 P11 B:SVP201 3.8 65.3 1.0 C28 B:SVP201 4.3 41.5 1.0 C27 B:SVP201 4.8 57.8 1.0

Chlorine binding site 4 out of 4 in the Streptavidin-S112Y-K121E Complexed with Palladium-Containing Biotin Ligand


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Streptavidin-S112Y-K121E Complexed with Palladium-Containing Biotin Ligand within 5.0Å range:

A.Chatterjee, H.Mallin, J.Klehr, J.Vallapurackal, A.D.Finke, L.Vera, M.Marsh, T.R.Ward. An Enantioselective Artificial Suzukiase Based on the Biotin-Streptavidin Technology. Chem Sci V. 7 673 2016.
ISSN: ISSN 2041-6520
PubMed: 29896353
DOI: 10.1039/C5SC03116H