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Chlorine in PDB 5css: Crystal Structure of Triosephosphate Isomerase From Thermoplasma Acidophilum with Glycerol 3-Phosphate

Enzymatic activity of Crystal Structure of Triosephosphate Isomerase From Thermoplasma Acidophilum with Glycerol 3-Phosphate

All present enzymatic activity of Crystal Structure of Triosephosphate Isomerase From Thermoplasma Acidophilum with Glycerol 3-Phosphate:
5.3.1.1;

Protein crystallography data

The structure of Crystal Structure of Triosephosphate Isomerase From Thermoplasma Acidophilum with Glycerol 3-Phosphate, PDB code: 5css was solved by S.H.Park, H.S.Kim, M.K.Song, K.R.Kim, J.S.Park, B.W.Han, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.17
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 72.633, 84.079, 143.539, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 22.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Triosephosphate Isomerase From Thermoplasma Acidophilum with Glycerol 3-Phosphate (pdb code 5css). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Triosephosphate Isomerase From Thermoplasma Acidophilum with Glycerol 3-Phosphate, PDB code: 5css:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 5css

Go back to Chlorine Binding Sites List in 5css
Chlorine binding site 1 out of 4 in the Crystal Structure of Triosephosphate Isomerase From Thermoplasma Acidophilum with Glycerol 3-Phosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Triosephosphate Isomerase From Thermoplasma Acidophilum with Glycerol 3-Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:30.3
occ:1.00
 O A:HOH441 3.1 39.6 1.0
NZ A:LYS201 3.2 47.3 1.0
N A:ARG12 3.2 22.7 1.0
O A:HOH493 3.3 45.5 1.0
CB A:ARG12 3.8 30.3 1.0
CD1 A:TYR11 3.8 23.7 1.0
CA A:TYR11 3.9 22.4 1.0
CB D:TYR65 3.9 25.5 1.0
N D:GLY66 4.0 25.1 1.0
CA D:GLY66 4.0 23.3 1.0
C D:TYR65 4.0 23.9 1.0
C A:TYR11 4.1 22.8 1.0
OE2 A:GLU13 4.1 44.9 1.0
CA A:ARG12 4.1 27.7 1.0
O D:TYR65 4.2 23.4 1.0
CE A:LYS201 4.3 49.2 1.0
CB A:TYR11 4.4 22.3 1.0
CG A:TYR11 4.6 22.6 1.0
O A:HOH461 4.6 40.2 1.0
O A:THR10 4.7 22.6 1.0
CA D:TYR65 4.7 24.7 1.0
CE1 A:TYR11 4.7 24.3 1.0
CG D:TYR65 4.9 23.9 1.0
O A:HOH490 5.0 47.0 1.0

Chlorine binding site 2 out of 4 in 5css

Go back to Chlorine Binding Sites List in 5css
Chlorine binding site 2 out of 4 in the Crystal Structure of Triosephosphate Isomerase From Thermoplasma Acidophilum with Glycerol 3-Phosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Triosephosphate Isomerase From Thermoplasma Acidophilum with Glycerol 3-Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl302

b:25.9
occ:1.00
 O B:HOH468 2.9 36.4 1.0
NZ B:LYS201 3.2 45.5 1.0
N B:ARG12 3.2 23.1 1.0
O B:HOH504 3.2 40.7 1.0
CB B:ARG12 3.8 28.0 1.0
CD1 B:TYR11 3.9 20.1 1.0
CA B:TYR11 3.9 21.7 1.0
N C:GLY66 3.9 24.8 1.0
CB C:TYR65 3.9 24.1 1.0
CA C:GLY66 4.0 24.1 1.0
C C:TYR65 4.0 23.2 1.0
C B:TYR11 4.1 22.3 1.0
OE2 B:GLU13 4.1 36.8 1.0
CA B:ARG12 4.1 26.9 1.0
O C:TYR65 4.2 25.4 1.0
CE B:LYS201 4.3 40.1 1.0
CB B:TYR11 4.4 20.8 1.0
O B:HOH437 4.5 38.0 1.0
CG B:TYR11 4.6 20.0 1.0
O B:THR10 4.6 22.4 1.0
CA C:TYR65 4.7 24.5 1.0
CE1 B:TYR11 4.8 21.7 1.0
CG C:TYR65 4.9 22.3 1.0

Chlorine binding site 3 out of 4 in 5css

Go back to Chlorine Binding Sites List in 5css
Chlorine binding site 3 out of 4 in the Crystal Structure of Triosephosphate Isomerase From Thermoplasma Acidophilum with Glycerol 3-Phosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Triosephosphate Isomerase From Thermoplasma Acidophilum with Glycerol 3-Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl302

b:29.6
occ:1.00
 O C:HOH475 3.0 42.0 1.0
NZ C:LYS201 3.1 47.8 1.0
N C:ARG12 3.3 28.2 1.0
O C:HOH413 3.3 55.1 1.0
CD1 C:TYR11 3.7 25.0 1.0
CA C:TYR11 3.8 23.4 1.0
CB C:ARG12 3.8 40.0 1.0
N B:GLY66 3.9 27.6 1.0
CA B:GLY66 3.9 24.0 1.0
OE2 C:GLU13 4.0 44.4 1.0
C C:TYR11 4.0 24.0 1.0
C B:TYR65 4.1 28.0 1.0
CB B:TYR65 4.1 28.4 1.0
CA C:ARG12 4.2 30.4 1.0
CE C:LYS201 4.2 45.9 1.0
O B:TYR65 4.3 25.1 1.0
CB C:TYR11 4.3 24.5 1.0
CG C:TYR11 4.5 22.3 1.0
CE1 C:TYR11 4.6 23.7 1.0
O C:THR10 4.7 20.7 1.0
CA B:TYR65 4.8 28.0 1.0
NE C:ARG12 4.8 49.9 1.0
N C:TYR11 4.9 21.2 1.0
CD C:GLU13 5.0 42.6 1.0

Chlorine binding site 4 out of 4 in 5css

Go back to Chlorine Binding Sites List in 5css
Chlorine binding site 4 out of 4 in the Crystal Structure of Triosephosphate Isomerase From Thermoplasma Acidophilum with Glycerol 3-Phosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Triosephosphate Isomerase From Thermoplasma Acidophilum with Glycerol 3-Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl302

b:34.1
occ:1.00
 O D:HOH489 3.0 47.3 1.0
NZ D:LYS201 3.2 45.2 1.0
N D:ARG12 3.2 26.5 1.0
CD1 D:TYR11 3.7 23.2 1.0
CB D:ARG12 3.7 40.4 1.0
CA D:TYR11 3.8 24.4 1.0
CA A:GLY66 3.9 25.8 1.0
N A:GLY66 3.9 27.5 1.0
C D:TYR11 4.0 24.3 1.0
OE2 D:GLU13 4.1 39.6 1.0
C A:TYR65 4.1 28.5 1.0
CA D:ARG12 4.1 31.0 1.0
CB A:TYR65 4.2 29.5 1.0
CE D:LYS201 4.3 45.7 1.0
CB D:TYR11 4.3 22.7 1.0
O A:TYR65 4.3 27.6 1.0
CG D:TYR11 4.5 22.0 1.0
O D:THR10 4.6 21.8 1.0
CE1 D:TYR11 4.7 23.3 1.0
CA A:TYR65 4.8 28.1 1.0
NE D:ARG12 4.8 58.6 1.0
N D:TYR11 4.9 22.4 1.0

Reference:

S.H.Park, H.S.Kim, M.S.Park, S.Moon, M.K.Song, H.S.Park, H.Hahn, S.J.Kim, E.Bae, H.J.Kim, B.W.Han. Structure and Stability of the Dimeric Triosephosphate Isomerase From the Thermophilic Archaeon Thermoplasma Acidophilum. Plos One V. 10 45331 2015.
ISSN: ESSN 1932-6203
PubMed: 26709515
DOI: 10.1371/JOURNAL.PONE.0145331
Page generated: Fri Jul 26 06:14:52 2024

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