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Chlorine in PDB 5cu3: Crystal Structure of CK2ALPHA with Compound 10 Bound

Enzymatic activity of Crystal Structure of CK2ALPHA with Compound 10 Bound

All present enzymatic activity of Crystal Structure of CK2ALPHA with Compound 10 Bound:
2.7.11.1;

Protein crystallography data

The structure of Crystal Structure of CK2ALPHA with Compound 10 Bound, PDB code: 5cu3 was solved by P.Brear, C.De Fusco, K.H.Georgiou, D.Spring, M.Hyvonen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.60 / 1.79
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 65.280, 66.333, 333.618, 90.00, 90.00, 90.00
R / Rfree (%) 18.4 / 20.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of CK2ALPHA with Compound 10 Bound (pdb code 5cu3). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of CK2ALPHA with Compound 10 Bound, PDB code: 5cu3:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5cu3

Go back to Chlorine Binding Sites List in 5cu3
Chlorine binding site 1 out of 2 in the Crystal Structure of CK2ALPHA with Compound 10 Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of CK2ALPHA with Compound 10 Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:62.4
occ:1.00
CL A:54S404 0.0 62.4 1.0
C17 A:54S404 1.7 48.4 1.0
C18 A:54S404 2.7 42.8 1.0
C16 A:54S404 2.7 38.4 1.0
C24 A:54S404 2.9 37.8 1.0
C19 A:54S404 3.1 38.4 1.0
CE A:MET225 3.4 37.2 1.0
SD A:MET225 3.6 38.9 1.0
CE1 A:PHE121 3.8 76.7 1.0
CD1 A:LEU128 3.9 44.6 1.0
CD2 A:LEU124 3.9 82.2 1.0
C13 A:54S404 4.0 36.5 1.0
C15 A:54S404 4.0 34.6 1.0
C23 A:54S404 4.1 35.2 1.0
CG A:LEU124 4.2 81.6 1.0
CD1 A:PHE121 4.2 75.7 1.0
C20 A:54S404 4.4 40.4 1.0
C14 A:54S404 4.5 33.8 1.0
CA A:TYR125 4.7 75.5 1.0
N A:TYR125 4.7 76.4 1.0
CG A:LEU128 4.8 44.5 1.0
CZ A:PHE121 4.8 75.5 1.0
CD1 A:ILE164 4.9 37.2 1.0
CB A:LEU124 4.9 77.5 1.0
CG A:MET225 5.0 31.4 1.0

Chlorine binding site 2 out of 2 in 5cu3

Go back to Chlorine Binding Sites List in 5cu3
Chlorine binding site 2 out of 2 in the Crystal Structure of CK2ALPHA with Compound 10 Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of CK2ALPHA with Compound 10 Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl403

b:71.5
occ:1.00
CL B:54S403 0.0 71.5 1.0
C17 B:54S403 1.7 56.5 1.0
C18 B:54S403 2.7 52.0 1.0
C16 B:54S403 2.7 50.0 1.0
C24 B:54S403 3.0 51.6 1.0
C19 B:54S403 3.1 50.3 1.0
CE B:MET225 3.6 52.8 1.0
CD1 B:LEU128 3.6 57.8 1.0
SD B:MET225 3.9 53.9 1.0
CE1 B:TYR125 3.9 95.1 1.0
CD2 B:LEU124 3.9 92.8 1.0
C13 B:54S403 4.0 44.9 1.0
CD1 B:TYR125 4.0 95.2 1.0
C15 B:54S403 4.0 44.2 1.0
CG B:LEU124 4.0 92.3 1.0
C23 B:54S403 4.1 50.7 1.0
CE1 B:PHE121 4.2 79.5 1.0
C20 B:54S403 4.3 50.4 1.0
CB B:LEU124 4.3 88.4 1.0
C14 B:54S403 4.5 42.0 1.0
CG B:LEU128 4.6 59.7 1.0
CD1 B:PHE121 4.6 78.9 1.0
CD1 B:ILE164 4.8 48.1 1.0
N B:TYR125 4.9 90.4 1.0
C B:LEU124 4.9 94.2 1.0

Reference:

P.Brear, C.De Fusco, K.Hadje Georgiou, N.J.Francis-Newton, C.J.Stubbs, H.F.Sore, A.R.Venkitaraman, C.Abell, D.R.Spring, M.Hyvonen. Specific Inhibition of CK2 Alpha From An Anchor Outside the Active Site. Chem Sci V. 7 6839 2016.
ISSN: ISSN 2041-6520
PubMed: 28451126
DOI: 10.1039/C6SC02335E
Page generated: Sat Dec 12 11:36:05 2020

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